- Molecular Tool 'Raf mRNA (Tokuoka 2018)' >
- Transcript 'KH2012:KH.C4.140.v1....' >
- Region 'REG00000144' >
- Transcript 'Moocci.CG.ELv1_2.S37...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S378550.g10839.01.t
Possible name(s)
NR5A2; NR6A1; RXRA
Gene model
Location
S378550 [19,561 / 34,457]
Amino acid sequence
Length: 604
>Moocci.CG.ELv1_2.S378550.g10839.01.p
MSLDLSLRRLESVSGLSLANQAQALRNVAALSKWSPAGQRQSNDGSPPFRSNHGSPSLPI
MPFSTYDNTNMHMLNPMLNPFTSPVNSGFYRLPSDELNSSTSSAKEDGKEAKSCLICGDR
ATGLHYGIISCEGCKGFFKRSICNKRVYRCTRSKNCVMSRKQRNRCQYCRLLKCLQMGMN
RKAIREDGMPGGRNKSIGPVEITAEEIDRIMTGKEFEDEIMREQSAYYDSNKSISPHSNA
MQYPPGYLMGNGSQSADWSAGAGHSNSQGQSGARMKHMPHPVTSVNSPGNMRHTNVSRDQ
ENFVSFQNQIPQFNPYAQQPQMRRNLSPEANTELSSAALVEQLLKAENLSDLESLATSKL
HSKLQINKDDIFCLLCTIADDMLYRQIVWVKKLPFFDQISIKDHTTLLSTTWAEIILLAA
LCVHEHQLFGELTDITTRYLPDSDELSRFSDFEMDVLERITFLYQKFMQLKVNKEEYVIM
KVINFLNQDIKGLQEVEQIEEINKRYWYACQRFTELRAMERNIDSANTNGGSGRFRDLML
CLPEIRYVAGKMLNTDIAKLPLLFKAILHTCKLQRIQAGHGSAATANNNSSQSPKASKGS
KLHC
Nucleotide sequence
Length: 1,908
>Moocci.CG.ELv1_2.S378550.g10839.01.t
ATTTTTATCCTACCAGGTTTATTACTGTATCCATCAATTAACATTAGCAATTAAAATCAT
TTTGTATCATCATCTATAACGAAAAACCTCAAAATGAGCCTTGACTTAAGCCTACGTCGC
TTAGAGTCTGTTAGCGGATTGTCGCTGGCAAACCAGGCCCAAGCGCTACGAAACGTAGCC
GCATTATCGAAATGGTCACCAGCTGGCCAACGACAATCAAACGACGGTTCGCCACCTTTT
CGTAGCAACCACGGCAGCCCGTCCTTACCCATAATGCCATTTTCAACGTACGATAACACA
AATATGCACATGTTGAATCCAATGTTAAACCCATTCACAAGTCCAGTTAATTCCGGTTTT
TACCGGTTACCGTCGGATGAGCTAAATTCTTCAACAAGTAGCGCAAAAGAAGACGGCAAA
GAGGCTAAAAGTTGTCTGATTTGTGGAGACAGGGCCACTGGGCTTCATTATGGAATCATC
TCTTGTGAGGGCTGTAAAGGATTCTTCAAAAGAAGCATATGCAATAAACGAGTATATCGA
TGTACCAGAAGCAAAAACTGTGTTATGTCACGAAAGCAGAGAAATCGGTGCCAGTATTGT
AGACTTCTTAAATGCCTGCAAATGGGGATGAACAGAAAAGCTATCCGTGAAGATGGAATG
CCTGGAGGTAGAAATAAAAGCATTGGACCTGTAGAGATCACAGCAGAAGAGATTGATCGA
ATAATGACTGGCAAAGAATTTGAAGACGAGATAATGCGAGAACAATCAGCTTATTATGAC
AGCAACAAAAGCATTTCACCACATTCCAATGCGATGCAATATCCGCCTGGTTATTTAATG
GGTAACGGATCCCAGTCTGCTGATTGGTCAGCGGGTGCTGGCCATTCAAACTCTCAGGGC
CAATCAGGGGCCAGAATGAAACATATGCCACATCCAGTTACTAGTGTTAATTCACCTGGG
AACATGAGACATACTAATGTCAGCAGAGATCAAGAAAACTTTGTTTCCTTCCAAAACCAA
ATACCTCAGTTCAATCCCTATGCACAACAGCCACAAATGCGAAGAAACCTCTCGCCTGAG
GCCAACACAGAACTCAGCAGCGCTGCGTTGGTGGAGCAATTACTAAAAGCCGAAAATCTT
TCTGACCTCGAATCACTAGCTACCTCCAAACTTCATTCCAAGCTCCAGATCAACAAGGAT
GACATATTCTGTCTCCTCTGCACAATTGCTGACGATATGCTGTACAGACAAATCGTGTGG
GTTAAAAAACTCCCATTTTTCGATCAGATCTCCATCAAAGATCACACTACTTTGCTGAGC
ACGACATGGGCTGAAATTATCTTGCTAGCTGCGTTGTGTGTGCACGAACATCAACTATTT
GGCGAATTGACTGACATAACGACGCGATACTTGCCAGACTCTGATGAGCTTTCAAGATTT
TCGGATTTTGAAATGGACGTATTGGAAAGAATCACATTTCTGTACCAAAAATTTATGCAA
CTGAAGGTTAATAAAGAAGAGTATGTTATCATGAAGGTCATCAACTTTTTAAATCAAGAT
ATTAAAGGACTCCAGGAAGTGGAGCAAATAGAAGAAATAAACAAGAGATACTGGTACGCT
TGCCAACGATTCACTGAGCTGCGAGCCATGGAACGGAACATTGATTCTGCTAATACTAAC
GGTGGATCTGGAAGGTTCCGAGATTTGATGCTGTGTCTTCCTGAAATCCGATATGTTGCA
GGAAAAATGCTCAATACTGATATCGCGAAGCTTCCGCTACTATTTAAAGCGATTCTGCAC
ACTTGCAAATTGCAAAGGATCCAGGCTGGTCATGGTTCAGCGGCTACTGCAAATAACAAT
TCGTCACAATCACCAAAAGCATCTAAAGGTTCAAAGTTACATTGTTAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[103-211] 2.9E-33 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[111-182] 1.1E-34 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[111-186] 20.359 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[113-181] 4.2E-28 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[114-140] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[114-130] 2.9E-17 - T[130-145] 2.9E-17 - T[163-171] 2.9E-17 - T[171-179] 2.9E-17 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[175-185] 3.8E-15 - T[378-399] 3.8E-15 - T[399-415] 3.8E-15 - T[470-485] 3.8E-15 - T[537-554] 3.8E-15 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[184-195] 1.97E-36 - T[326-568] 1.97E-36 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[375-554] 1.8E-12 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[377-549] 2.4E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR6A1_HUMAN | 52.469 % | 488 | 1.2E-168 |
| RXRA_HUMAN | 34.348 % | 119 | 7.14E-29 |
| NR5A2_HUMAN | 26.869 % | 155 | 1.22E-40 |