- Transcript 'KH2012:KH.C2.425.v3....' >
- Transcript 'KH2012:KH.C2.425.v2....' >
- Transcript 'KH2012:KH.C6.283.v1....' >
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- Transcript 'Moocci.CG.ELv1_2.S28...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S284917.g06998.01.t
Possible name(s)
PABPC1; PABPC4; PABPC4L
Gene model
Location
S284917 [3,051 / 7,076]
Amino acid sequence
Length: 286
>Moocci.CG.ELv1_2.S284917.g06998.01.p
MAAGPISERNQDATVYVGGLDDKVKEPLLWELFLQAGPVVSTHMPKDRITGSHQGYGFVE
FLSEEDADYSIKILNMIKLYGKPIRVNKASAHQKNLDVGANLFIGNLDPEIDEKLLYDTF
SAFGVILQTPKIMRDPDTGSSKGYAFINFASFDASDAALEAMNGQYLCNRPITISYAFKK
DSKGERHGSAAERLLAMQNPLSQADRPHTLFADAPVAPPLGVSSMPPLSMPPVPPAGMNN
MRPPMPMGMPMPPFMSGGPPMPPPNMMDQSQWGPPMGPPPPMGPPP
Nucleotide sequence
Length: 858
>Moocci.CG.ELv1_2.S284917.g06998.01.t
ATGGCTGCAGGCCCCATATCTGAAAGAAATCAAGATGCAACAGTTTATGTTGGAGGATTA
GATGACAAAGTAAAGGAGCCATTACTATGGGAACTTTTTCTTCAAGCAGGACCCGTTGTC
AGCACACATATGCCAAAGGATAGAATCACTGGAAGCCATCAAGGATACGGATTTGTTGAG
TTTTTGTCAGAAGAAGATGCAGATTATTCTATTAAAATTTTAAACATGATAAAACTATAT
GGTAAACCTATTCGTGTAAACAAGGCTTCAGCACACCAGAAAAACCTAGATGTTGGAGCC
AATTTATTTATAGGTAACTTAGACCCTGAAATCGATGAAAAATTACTTTATGATACTTTC
AGTGCTTTTGGTGTGATCCTACAAACTCCCAAGATAATGAGAGATCCTGATACAGGAAGT
TCAAAAGGTTATGCTTTTATTAACTTTGCTAGTTTTGATGCATCTGATGCTGCTCTTGAA
GCTATGAACGGACAATATCTTTGTAATCGACCTATTACCATTTCATATGCCTTTAAAAAG
GATTCCAAAGGAGAGAGACATGGAAGTGCTGCAGAACGACTGCTGGCCATGCAAAACCCA
CTTTCTCAAGCTGATCGCCCCCATACTTTGTTTGCCGACGCACCAGTTGCTCCTCCATTA
GGTGTATCGAGTATGCCCCCATTATCCATGCCGCCTGTGCCACCAGCAGGAATGAACAAT
ATGAGGCCACCAATGCCCATGGGAATGCCAATGCCACCGTTCATGTCAGGTGGGCCGCCT
ATGCCACCACCAAATATGATGGATCAGTCACAATGGGGTCCACCTATGGGACCACCGCCC
CCAATGGGACCACCACCA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[5-99] 6.2E-26 - T[100-189] 6.2E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[12-183] 4.12E-48 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[13-91] 17.029 - T[100-179] 17.029 |
| SMART |
RRM_dom (IPR000504) - T[14-87] 1.6E-22 - T[101-175] 3.7E-24 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[15-88] 3.08901E-53 |
| Pfam |
RRM_dom (IPR000504) - T[15-85] 8.7E-15 - T[102-172] 6.4E-20 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[99-181] 2.58207E-61 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 37.705 % | 123 | 1.34E-31 |
| PABP4_HUMAN | 39.891 % | 127 | 5.75E-33 |
| PAB4L_HUMAN | 39.891 % | 120 | 1.46E-31 |