- Transcript 'Moocci.CG.ELv1_2.S27...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S276150.g06625.01.t
Possible name(s)
COL11A2; COL24A1
Gene model
Location
S276150 [83,665 / 86,356]
Amino acid sequence
Length: 655
>Moocci.CG.ELv1_2.S276150.g06625.01.p
MRFSVILITVITGLINETRGQSRFLNGVELSETAVILDDDEPQIIRIDPTRPAEESTDRS
PKECTSNCEEKLENPQACEATTTCASSQTSCSANNCCCCGGASSASTVLLEAISNMMQGP
PGPQGVPGQAGPAGINGAPGQPGMQGITGLQGPQGLQGPPGPPGKGIKGDVGPCGPKGMP
GNPGISIPGPKGERGPPGLPGTTNYQELTDSGIQVISGPPGPPGKDGTNGRPGIGIKGEE
GPPGPPGPPGKTITTDNEVVEGEKGQKGEVGVGEPGLPGIQGEKGEKGMTGTSIKGETGP
KGEPGIGVQGPPGNDGLSIKGERGLQGEPGPPGPPGPPGRNGDVGSDDLISPQGEGTKGK
DGLPGMKGPPGMKGEKGDQGLPGIEGIQGPRGPSGIQGPEGIKGSMGRTGVQGRTGIRGP
PGQSIRGSRGEKGSRGLPGLNGIGVPGPPGPPGPPGSQGNNGYGSNYQSSVQVQQNNNVG
EGGNANCCKQERIAFMAGLSHNMLGNYDRIAFDKVITNEGGAYNERTGCFIAPAAGLYVF
HMHILRCINGGPLFAHLMKNNEMVSSGTNQDIKYETTSTTAVLMLRKCDVVWVRLRQGTV
YGHSPSHYTSFSGFSVSLDEAIDTNAYTIADTSLASYPLRRKSPRFASAVTLTGD
Nucleotide sequence
Length: 2,626
>Moocci.CG.ELv1_2.S276150.g06625.01.t
AGGAAACAAAATCAAAATTAGTAATGAGGTTTTCAGTGATACTGATTACAGTTATAACTG
GTTTAATTAACGAGACCCGCGGTCAATCTCGCTTTTTAAACGGGGTCGAATTAAGCGAAA
CCGCTGTAATACTAGACGATGATGAGCCTCAAATAATACGAATTGACCCGACACGACCTG
CCGAAGAAAGCACAGATCGTTCGCCGAAAGAATGCACATCTAATTGCGAAGAGAAGTTGG
AAAATCCCCAAGCTTGTGAAGCGACGACCACGTGTGCTTCTTCTCAAACGTCTTGTTCAG
CTAATAACTGCTGTTGCTGTGGAGGCGCGTCATCTGCAAGTACTGTTTTATTGGAGGCAA
TTAGTAATATGATGCAGGGGCCGCCTGGGCCGCAAGGTGTGCCAGGTCAAGCAGGACCAG
CTGGGATCAATGGTGCTCCAGGTCAACCAGGCATGCAAGGAATTACTGGTTTACAAGGAC
CTCAAGGTTTACAGGGACCTCCTGGACCACCCGGAAAAGGAATTAAGGGAGATGTTGGAC
CATGCGGACCTAAAGGAATGCCTGGTAATCCAGGTATTAGCATACCTGGCCCCAAAGGTG
AACGTGGACCCCCAGGGTTACCCGGAACAACAAATTATCAAGAATTAACAGATTCTGGTA
TACAAGTAATATCTGGTCCTCCTGGACCTCCAGGAAAAGATGGAACTAACGGACGACCAG
GAATTGGTATCAAAGGGGAAGAAGGTCCACCTGGGCCACCGGGCCCACCAGGAAAGACAA
TTACAACTGATAATGAAGTTGTGGAAGGTGAAAAGGGACAAAAAGGTGAAGTTGGTGTGG
GTGAACCTGGACTGCCAGGTATTCAAGGAGAAAAAGGTGAAAAGGGTATGACAGGAACCA
GCATAAAGGGCGAAACTGGACCAAAAGGTGAACCCGGAATCGGAGTACAAGGACCACCTG
GAAATGATGGACTTTCAATTAAAGGTGAGAGAGGATTGCAAGGTGAACCAGGTCCACCGG
GACCTCCTGGTCCCCCAGGTAGAAATGGTGATGTTGGGAGTGATGATCTAATTTCCCCAC
AAGGAGAAGGGACAAAAGGTAAAGATGGTTTGCCTGGGATGAAAGGTCCTCCTGGAATGA
AAGGGGAAAAAGGTGATCAAGGTCTCCCAGGTATAGAGGGTATTCAGGGTCCCCGTGGTC
CATCTGGAATACAGGGTCCCGAAGGCATTAAAGGAAGTATGGGCAGAACAGGTGTACAAG
GTAGAACTGGAATTAGAGGACCACCTGGACAATCAATCAGAGGATCAAGGGGTGAAAAGG
GTTCACGAGGTTTGCCGGGTCTTAATGGGATTGGTGTACCCGGCCCACCTGGGCCTCCTG
GTCCACCTGGTTCACAAGGAAATAATGGGTATGGCAGCAATTACCAAAGTAGCGTCCAAG
TACAACAAAATAATAATGTTGGTGAAGGAGGTAATGCAAACTGCTGCAAACAAGAAAGAA
TTGCGTTCATGGCAGGATTGTCACATAACATGTTGGGGAATTATGATCGTATTGCTTTTG
ATAAAGTTATTACAAACGAAGGTGGTGCATATAATGAACGAACAGGGTGTTTTATTGCAC
CAGCTGCGGGACTATACGTATTCCACATGCATATTTTACGTTGTATCAATGGTGGACCCC
TGTTTGCGCATCTTATGAAAAATAACGAAATGGTAAGTTCTGGAACAAATCAAGATATTA
AATATGAAACTACGAGCACTACAGCAGTGTTAATGTTGCGTAAATGTGACGTTGTGTGGG
TTAGATTACGTCAAGGCACAGTATACGGACATAGCCCGTCGCATTATACGTCATTTTCGG
GATTTTCCGTGTCACTGGACGAAGCAATTGATACAAACGCATATACAATTGCGGACACGT
CATTAGCTAGTTATCCTCTGCGAAGAAAATCCCCTAGATTTGCAAGTGCTGTAACTTTAA
CTGGAGATTAATAAAGAGTTTCAAAGGTTAGAAAATTTTCGTCAAAACAGGGACAAATCT
ACTTCAATCAAATAAGGACTGCTACCAGGCCAGATAAACTAAGGATTTACAACGCATTGT
AGTGTTTTGTGTTTATTTATTAATTTACTTTTTTACTTGTATTATGATTTTGTACGTGTT
AGTGTTATTTTTTTGTATTTTCTTCGTTTTTTCTCCTATTTTACATAATACCTTCAGCAT
ATTTTTCTGTACACAAATCTTTTCCGTGTTTAACGATATCAAGAACAAAACAAAGATCAA
TAATAATCTAGTTATACAGTTACTATGACGCAATTTGTTCAAATAAATTAAATTACTGTG
ACATTAATAGTCTTTATCAACATATTTTGCTGATAAACAACTTTAATTAAACTACAAATA
TTTTTTACAATTAAAATTTATATGACTAGAACTAAATTCCCAGCCGAATTTTAACCACAG
TGATACAACACCGCCTGTTTTATGTCTTGTTTACAATATGTTATCGAATGTTTAAAGTGC
TTTTCTTTATCATAAATATTATATAATATCGTCAATTTACTGTGCTGGACACAATTTCAA
TCATTGACTGGGCTCAATGTCATTAATAAGGCAAAATATAACGAAA
| Pfam |
Collagen (IPR008160) - T[118-165] 2.1E-7 |
| SMART |
C1q_dom (IPR001073) - T[486-619] 4.1E-17 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[486-625] 4.1E-35 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[488-622] 25.989 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[492-614] 1.33E-25 |
| Pfam |
C1q_dom (IPR001073) - T[494-614] 8.5E-23 |
| PRINTS |
C1q_dom (IPR001073) - T[503-529] 1.2E-9 - T[530-549] 1.2E-9 - T[575-596] 1.2E-9 - T[607-617] 1.2E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 42.328 % | 126 | 6.49E-30 |
| COLA1_HUMAN | 39.65 % | 123 | 3.73E-29 |
| COOA1_HUMAN | 42.033 % | 129 | 7.9E-31 |
