- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Moocci.CG.ELv1_2.S24...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S246441.g05601.01.t
Possible name(s)
LAMC1; LAMC3; NTN1
Gene model
Location
S246441 [9,186 / 12,216]
Amino acid sequence
Length: 379
>Moocci.CG.ELv1_2.S246441.g05601.01.p
MENVIYYESKIKILITLHYTSLKLHCLVASNIRRQPLDHCVGKAFDITYVRLKFHSSRPE
SFAIYKKTCDTCEWEPYQFYSGTCHQTYGLDNKDVITIENEKKALCTEDYSDISPLTGGN
VAFSTLEGRPSATNFDRSPTLQNWVTATAIRITLNRINTFGDEVFSDSKVLKSYYYAISD
FAVGGRCKCNGHASQCKLGPDKKLKCVCEHHTTGVNCELCEPLYNNKPWSRGGDGSAHAC
EKCDCNGLAESCEFDENLYRSTGGDGGRCIACRDNTAGVHCELCLPNHYRDPISKRCVSC
ECSLFGSTKSQCDDNGQCSCKYGVGGERCDRCLEGYYGFSESGCTQCNCALEGTEPKTVC
NPTTGACVCKLNVEGETCN
Nucleotide sequence
Length: 1,137
>Moocci.CG.ELv1_2.S246441.g05601.01.t
ATGGAAAATGTGATTTATTATGAATCGAAGATTAAGATCTTAATTACACTGCACTACACC
TCATTAAAATTGCATTGTTTAGTCGCTAGTAACATACGTCGACAACCACTTGACCATTGT
GTAGGGAAAGCATTTGATATAACATACGTCCGTCTTAAGTTTCATTCATCAAGGCCCGAG
AGCTTCGCTATTTACAAGAAGACATGTGATACATGCGAATGGGAACCTTACCAATTTTAC
TCTGGAACATGCCACCAAACCTACGGCCTAGATAATAAGGACGTCATAACAATTGAGAAT
GAGAAAAAGGCACTTTGTACTGAAGACTACAGCGACATTTCACCATTAACTGGCGGCAAT
GTAGCCTTTAGTACATTGGAAGGACGACCAAGTGCCACAAATTTTGACCGCAGTCCTACA
TTACAGAATTGGGTGACAGCCACTGCAATCCGAATCACTTTAAACAGAATAAATACATTT
GGAGATGAAGTTTTCAGCGATTCGAAAGTTTTAAAGTCTTATTACTACGCTATATCGGAT
TTTGCTGTTGGAGGAAGGTGTAAATGTAATGGCCATGCTTCCCAGTGTAAGCTTGGACCC
GATAAAAAGTTAAAATGTGTATGCGAACACCACACTACCGGCGTTAACTGCGAACTTTGC
GAACCGTTATACAACAACAAACCCTGGAGCAGAGGCGGAGATGGAAGTGCTCATGCTTGT
GAAAAATGTGACTGTAATGGCTTAGCAGAATCTTGCGAGTTCGATGAAAACTTATACCGA
AGTACTGGAGGCGATGGAGGACGATGTATTGCTTGCCGTGATAACACTGCTGGAGTTCAC
TGTGAACTTTGCTTGCCAAACCATTACCGAGACCCAATATCTAAGCGATGTGTTTCGTGT
GAATGCAGTTTGTTTGGTTCGACAAAGTCTCAATGCGATGACAACGGCCAGTGCTCGTGC
AAGTATGGTGTGGGAGGTGAGCGTTGTGATCGTTGTTTGGAGGGATACTATGGGTTTAGC
GAGTCTGGTTGCACACAATGTAACTGCGCTTTAGAAGGAACCGAACCCAAAACGGTGTGT
AACCCTACTACTGGCGCATGTGTGTGCAAGCTCAACGTTGAAGGGGAAACTTGTAAC
| ProSiteProfiles |
Laminin_N (IPR008211) - T[1-186] 32.218 |
| SMART |
Laminin_N (IPR008211) - T[5-185] 2.3E-45 |
| Gene3D |
Laminin_N_sf (IPR038684) - T[33-208] 1.1E-67 |
| Pfam |
Laminin_N (IPR008211) - T[42-185] 1.6E-51 |
| ProSiteProfiles |
Laminin_EGF (IPR002049) - T[187-242] 10.064 - T[243-299] 10.807 - T[300-346] 19.09 - T[347-379] 12.635 |
| Pfam |
Laminin_EGF (IPR002049) - T[187-231] 1.7E-6 - T[243-293] 1.2E-6 - T[300-344] 1.6E-9 - T[347-379] 1.2E-4 |
| SMART |
Laminin_EGF (IPR002049) - T[187-240] 2.2E-5 - T[243-297] 2.3E-9 - T[300-344] 3.3E-11 - T[347-379] 0.79 |
| ProSitePatterns |
Laminin_EGF (IPR002049) - T[318-349] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMC1_HUMAN | 61.357 % | 414 | 1.86E-132 |
| LAMC3_HUMAN | 56.14 % | 392 | 9.31E-125 |
| NET1_HUMAN | 48.026 % | 289 | 1.0E-92 |