- Transcript 'KH2012:KH.C12.116.v2...' >
- Region 'REG00000853' >
- Transcript 'KH2012:KH.C7.492.v1....' >
- Transcript 'Boleac.CG.SB_v3.S72....' >
- Transcript 'Moocci.CG.ELv1_2.S20...'
Transcript Model
Transcript Id
Moocci.CG.ELv1_2.S202149.g04264.01.t
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
S202149 [25,410 / 30,777]
Amino acid sequence
Length: 1,113
>Moocci.CG.ELv1_2.S202149.g04264.01.p
MPEINILGVTVEFPFKPYDLQVDYMTKVIEALQRRKNALLESPTGTGKTLCLLCASLAWR
KSELKKFAPTVPDSIDSEPSYPIGWGQSGGADSQNPPPPNVAKIIYSSRTHSQLAQAVNE
LKNTAYAKTVKISVLGSRDQLCVHPEVSRQTNNTAKVHMCRNKVSKHMCHYYNNTENGKN
VPNTGTELMDIEDLVNLGKKRNICPYYHSRELSKEPDCDIIFTPYNYLIDKKSRRANKLE
IEGNFLIFDEAHNVEKVCEESASFEISSLDLAQCVKEVGDLLHAVKKVKDTGIMPEGHEA
GETASLGEFDEESLAILKILFVTLEEELDKFTLGNDGITKNGDYVFEFFEKTHEAIIDIL
DRVTAYLSTLSNQFQVRGVGLQKFSEVVKVIFNQSELENVPTALIPMQQDRVREQISMYY
RVHIWEAVKATPSSPKKQNTWLNSKSSSASQKTRHLSYWCFSPGYAMRDMISSGVRNILL
TSGTLCPLQSFMSELQINFPITLQNPHIISDYQVFVSVIPFARNKVRLESTYKARNDINI
VKQLGVSLIDIARYSPNGMLVFFPSYGAMSQYLKAWQDMDIMKQLDMVKPVTEEPRTKGD
LKDAMDKFYNDAKTTQGGTMLAVCRGKVSEGLDFANENGRTVVILGPPFPPVNDPRVKLK
MKILDAMKWTQSMPNLIRGQEWYRLQALRAVNQAIGRVIRHRFDYGAIIFLDYRYQEKSY
TTDFPKWIQGRVNVFNDFDQAIRRLRSFFCSAVQKETYRLKQLNSNVEVPLKESKNISNT
KKLPNQPVVNKKPTEMLSMYGGVKSKTTDQKRKIPTVIRRHNDFEDHIPSSVNFGSQLPS
SNHCSGDSSKVKKKSESLFTALDDDGQKLEKIGFSYSSPALKSKRDALSQNIMMRKRKMD
EQRTMNKKIKVVSNNSNKMTFGSSSDTQRQAPLKSESRNKDVAKPKPPIPKDNEANLSNL
SSCSNESIGRNLTDSEKLLCQTSFNNSCSSKELKTADENVKKSSSIKSSKNCETNKTKEP
LTKNGATKSKRNIPMNPLEYRNKVKETLSKEKYAIFKRASQLYTKNPDLEILVSSLSDIF
LSSPDFQDLFLSFSMFVKREQRSKFAEMLLENG
Nucleotide sequence
Length: 3,342
>Moocci.CG.ELv1_2.S202149.g04264.01.t
ATGCCTGAAATTAATATTTTGGGGGTTACGGTTGAATTCCCATTCAAGCCATACGATCTG
CAAGTTGACTACATGACAAAAGTCATTGAAGCCTTGCAAAGAAGAAAAAATGCCTTGCTT
GAATCACCTACCGGAACTGGAAAAACTTTATGCTTACTTTGCGCATCTTTAGCTTGGAGA
AAATCAGAACTAAAAAAGTTCGCCCCCACTGTTCCTGATTCTATTGATTCAGAACCTTCT
TACCCTATAGGCTGGGGTCAAAGTGGAGGAGCTGATAGTCAAAACCCACCTCCGCCCAAT
GTGGCTAAGATTATTTATTCTTCAAGAACACATAGTCAATTAGCTCAAGCTGTGAATGAG
TTGAAAAATACTGCTTACGCTAAAACGGTTAAAATAAGTGTTTTGGGTTCCCGAGATCAA
CTTTGTGTTCACCCCGAAGTTTCAAGACAAACCAATAACACAGCTAAAGTTCATATGTGC
AGAAACAAAGTCAGTAAGCACATGTGCCACTATTATAATAACACTGAAAATGGTAAAAAT
GTACCTAACACAGGGACTGAATTGATGGATATTGAAGATTTGGTTAATCTTGGTAAAAAG
AGGAACATCTGTCCATATTATCATTCTCGAGAACTTTCCAAAGAACCTGATTGTGATATT
ATATTTACACCTTACAATTATTTAATTGACAAAAAGTCACGTCGGGCGAACAAGCTGGAA
ATTGAGGGTAATTTTCTAATATTTGATGAAGCTCACAATGTTGAAAAAGTTTGTGAAGAA
TCTGCATCTTTTGAGATATCTTCTTTAGATCTTGCTCAGTGTGTAAAAGAAGTTGGGGAC
CTTCTTCATGCAGTCAAAAAAGTTAAAGACACAGGAATTATGCCAGAAGGACATGAAGCA
GGTGAAACAGCATCTTTGGGTGAATTTGATGAAGAATCTCTAGCAATCTTAAAGATTTTA
TTTGTAACGCTTGAAGAGGAGCTTGATAAGTTTACTCTTGGTAATGATGGCATTACTAAG
AATGGAGATTATGTTTTTGAATTCTTTGAAAAAACTCATGAAGCGATTATTGATATTTTA
GACAGAGTAACAGCATATTTGTCAACGCTTAGCAACCAATTTCAAGTTCGGGGAGTTGGA
CTTCAGAAATTCTCAGAAGTAGTAAAAGTTATTTTTAACCAATCTGAACTTGAGAATGTA
CCAACTGCTCTTATCCCTATGCAGCAAGACAGAGTGAGAGAGCAAATTTCAATGTATTAT
CGAGTTCACATTTGGGAAGCGGTAAAAGCTACCCCTTCTTCCCCTAAAAAACAGAACACT
TGGTTAAACTCTAAATCTTCCAGTGCAAGTCAGAAAACCAGGCATTTAAGCTACTGGTGT
TTCAGTCCTGGATATGCTATGAGAGATATGATCTCTTCTGGTGTTAGAAATATTCTATTA
ACAAGTGGAACGTTATGCCCTCTTCAATCTTTTATGTCTGAGTTGCAAATAAACTTTCCC
ATAACTCTTCAAAATCCGCATATAATTAGCGATTACCAAGTCTTTGTTTCTGTTATTCCA
TTTGCAAGAAACAAGGTCCGTTTGGAATCAACTTATAAAGCAAGAAATGACATTAATATT
GTAAAACAACTAGGAGTTTCTCTCATAGACATTGCAAGGTACAGTCCTAATGGAATGCTT
GTCTTTTTCCCATCATATGGAGCAATGAGCCAGTATTTAAAAGCATGGCAAGATATGGAC
ATTATGAAACAACTTGATATGGTGAAGCCTGTCACTGAGGAACCGAGAACAAAGGGAGAT
TTAAAAGATGCAATGGACAAGTTTTACAATGATGCAAAAACAACACAAGGAGGAACTATG
CTTGCAGTATGTCGTGGAAAAGTTTCAGAAGGTTTGGATTTTGCAAATGAGAATGGTCGA
ACAGTTGTAATATTAGGACCTCCTTTTCCTCCAGTTAATGATCCAAGAGTAAAGTTAAAG
ATGAAAATATTAGATGCAATGAAATGGACCCAGTCAATGCCAAATCTAATCAGAGGTCAA
GAATGGTACAGACTGCAAGCTCTAAGAGCTGTCAATCAAGCTATTGGTAGAGTTATTCGT
CACAGATTTGATTATGGTGCGATCATATTTCTAGACTACAGGTATCAGGAGAAAAGCTAC
ACCACTGATTTCCCTAAATGGATTCAAGGAAGAGTTAATGTGTTCAACGACTTTGATCAG
GCAATAAGGAGATTGCGGTCATTCTTTTGTTCTGCTGTTCAGAAAGAAACCTACAGATTA
AAGCAGTTAAACTCAAATGTTGAGGTTCCTCTTAAAGAATCCAAGAATATTTCCAATACA
AAAAAGCTGCCTAATCAGCCAGTGGTAAATAAAAAACCAACTGAAATGCTATCTATGTAC
GGAGGAGTGAAAAGTAAAACAACGGATCAAAAACGAAAGATTCCCACTGTAATTCGAAGG
CATAATGATTTTGAAGATCATATACCATCATCTGTTAATTTTGGATCACAGCTACCATCT
TCTAATCATTGTTCTGGAGATTCTAGTAAAGTTAAGAAAAAATCAGAAAGTCTCTTTACT
GCTTTAGATGATGATGGACAAAAACTTGAAAAAATTGGATTCTCTTATTCAAGCCCAGCA
CTAAAATCCAAAAGAGATGCTCTTTCCCAGAATATTATGATGAGAAAGCGCAAAATGGAT
GAACAAAGAACCATGAATAAGAAAATCAAAGTTGTTTCCAATAACAGCAATAAAATGACA
TTCGGTTCTAGTAGTGATACCCAAAGACAGGCTCCATTGAAATCTGAAAGTAGAAATAAA
GATGTCGCAAAACCCAAACCTCCTATTCCTAAAGATAACGAAGCTAATTTGAGTAATTTA
AGTTCTTGTAGCAATGAATCGATTGGAAGAAATCTAACAGATTCAGAAAAACTACTTTGT
CAAACGAGTTTTAATAATTCATGTAGTAGTAAAGAACTTAAAACAGCAGATGAAAATGTT
AAAAAATCTTCCAGTATTAAATCTAGTAAAAATTGTGAGACAAATAAAACTAAAGAACCA
CTAACTAAGAATGGGGCTACTAAATCCAAACGCAATATTCCTATGAATCCTTTGGAATAC
AGAAATAAAGTTAAAGAAACGCTGTCAAAGGAAAAATATGCAATTTTTAAACGAGCATCT
CAATTGTACACTAAGAATCCAGATCTTGAAATACTTGTTTCCAGTTTGAGTGATATTTTT
TTATCGTCGCCTGATTTCCAAGATTTATTTTTGTCGTTTTCAATGTTCGTTAAACGAGAA
CAAAGATCTAAGTTTGCCGAAATGCTATTAGAAAATGGATAG
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[7-304] 29.181 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[9-295] 7.4E-58 |
| TIGRFAM |
Rad3/Chl1-like (IPR013020) - T[10-743] 1.3E-140 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[13-334] 0.0032 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[28-62] 2.91E-12 - T[99-122] 2.91E-12 - T[198-272] 2.91E-12 - T[474-488] 2.91E-12 - T[523-712] 2.91E-12 |
| Pfam |
DEAD_2 (IPR010614) - T[106-270] 1.2E-51 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[549-729] 5.0E-51 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[566-717] 8.0E-49 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX12_HUMAN | 25.069 % | 207 | 5.85E-55 |
| FANCJ_HUMAN | 32.106 % | 314 | 9.14E-90 |
| RTEL1_HUMAN | 37.643 % | 632 | 0 |