Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S190765.g03842.01.t

Possible name(s)

NHLRC2

Gene model

Moocci.CG.ELv1_2.S190765.g03842

Location

S190765 [5,216 / 11,358]

Sequences

Amino acid sequence

Length: 328

>Moocci.CG.ELv1_2.S190765.g03842.01.p
CLNSLIQCSIILLYLVTSSLAIEGIVTTVAGGGLPHIGHVDSCVDGPASVDGSTKTSRFN
YPWGILYVSQLNSIFVADCGCVETLHSNDRIRVVDLNRDVVATIAGGKQGYEDGIGTKTK
FFHSAGLAMRAENHLLFVADSGNDVIRTINTITMETKTLTGKFSEKXXXXGGIKEAREGF
TDGRLTVAKFKHPTGMALDGDSNRMYISDHYNHVIRRLDFDTGMVTTIAGTGVPGTPQQS
MGKGRQAYLHYPEGLVLDHTYNILYVAEFGNNCIRGIDLNDDTVFVLAGGGAYGSRDAIG
LDAQFYHPTDLTLDPTNHVLYVSDQYNH

Nucleotide sequence

Length: 984

>Moocci.CG.ELv1_2.S190765.g03842.01.t
TGTTTGAATAGCTTAATCCAATGCTCCATCATTTTACTGTACCTTGTGACGTCATCATTA
GCAATAGAGGGCATTGTGACGACAGTAGCAGGCGGGGGACTTCCCCATATTGGTCACGTG
GACAGTTGTGTTGATGGACCAGCTTCAGTAGACGGCAGTACAAAGACTTCCAGGTTCAAC
TACCCGTGGGGGATTTTGTATGTGTCACAACTCAACTCGATATTCGTGGCTGACTGCGGG
TGCGTGGAGACGCTTCACAGTAACGATAGGATACGCGTCGTTGATTTGAACCGCGACGTT
GTTGCAACTATTGCTGGTGGGAAGCAAGGATACGAGGACGGGATTGGAACCAAGACAAAA
TTCTTCCACTCAGCCGGTTTGGCAATGCGAGCGGAAAACCATTTGCTTTTCGTCGCCGAC
AGCGGAAATGATGTCATCAGGACTATAAACACAATTACCATGGAGACAAAAACATTGACG
GGAAAATTCTCTGAAAAGNNNNNNNNNNACGGTGGAATTAAAGAAGCAAGAGAAGGTTTC
ACCGACGGGCGATTAACTGTGGCGAAGTTTAAACATCCTACAGGAATGGCGCTTGACGGT
GACTCGAACCGCATGTACATCTCGGACCACTACAACCACGTCATACGGAGATTGGACTTT
GATACCGGTATGGTAACGACTATAGCAGGGACGGGAGTGCCCGGGACACCACAACAAAGT
ATGGGAAAAGGTCGACAAGCTTATCTCCATTACCCAGAAGGGCTGGTTCTAGATCATACA
TATAATATCCTGTATGTGGCCGAGTTTGGGAATAACTGCATAAGGGGGATTGATCTAAAC
GACGACACTGTATTTGTGCTGGCTGGGGGCGGGGCTTATGGCAGCAGAGACGCAATTGGA
TTGGACGCCCAGTTTTACCATCCCACTGACCTGACCCTCGACCCCACAAACCACGTGTTG
TACGTGAGTGACCAGTATAATCAC

InterProScan

Gene3D	6-blade_b-propeller_TolB-like (IPR011042) - T[18-85] 3.9E-6 - T[86-152] 1.0E-11 - T[170-273] 6.3E-28 - T[274-328] 3.7E-10
SMART	LDLR_classB_rpt (IPR000033) - T[183-225] 0.15 - T[242-284] 43.0

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NHLC2_HUMAN	28.041 %	82.8	1.99E-17