Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocci.CG.ELv1_2.S138720.g02384.01.t

Possible name(s)

ACTB; ACTG1; ACTG2

Gene model

Moocci.CG.ELv1_2.S138720.g02384

Location

S138720 [10,364 / 11,335]

Sequences

Amino acid sequence

Length: 246

>Moocci.CG.ELv1_2.S138720.g02384.01.p
MEDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAICRLDL
AGRDLTDYLVKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY
ELPDGQ

Nucleotide sequence

Length: 802

>Moocci.CG.ELv1_2.S138720.g02384.01.t
TTGACAGAAATATTTAAATTTAATTTGCCCTTAAACTTTAACATAAGTAACTAAACTAAT
TATCATGGAAGATGAAGTAGCCGCCTTAGTTGTTGACAATGGATCTGGAATGTGCAAAGC
TGGTTTTGCAGGAGATGACGCTCCACGAGCCGTCTTCCCTTCCATTGTCGGAAGACCGAG
ACATCAGGGTGTTATGGTTGGAATGGGTCAAAAAGACAGCTACGTAGGAGACGAAGCCCA
AAGCAAAAGAGGAATTCTCACACTAAAATATCCAATTGAACACGGTATCGTAACAAACTG
GGATGACATGGAAAAGATCTGGCATCACACATTTTACAACGAACTTCGTGTAGCACCCGA
AGAGCACCCAGTCCTCCTTACCGAAGCCCCACTTAATCCCAAAGCCAATCGCGAAAAAAT
GACGCAAATTATGTTCGAAACTTTTAATGCTCCCGCTATGTACGTTGCAATTCAAGCTGT
TTTGTCATTATATGCATCTGGACGTACTACAGGTATTGTTATGGACTCCGGCGATGGTGT
TTCCCACACTGTACCAATTTACGAAGGCTACGCACTTCCACACGCCATCTGCCGCCTTGA
TTTAGCTGGCCGTGATTTAACTGATTATCTTGTGAAAATTTTAACCGAAAGGGGATATTC
TTTTACAACGACAGCTGAAAGAGAAATCGTTCGTGACATCAAAGAAAAGCTTTGTTATGT
TGCTTTGGACTTCGAACAAGAAATGGCTACCGCGGCATCAAGCAGTTCTTTGGAAAAAAG
CTACGAATTACCAGACGGACAA

InterProScan

PANTHER	Actin (IPR004000) - T[1-246] 7.8E-175
Pfam	Actin (IPR004000) - T[3-246] 2.0E-88
SMART	Actin (IPR004000) - T[5-246] 2.5E-91
PRINTS	Actin (IPR004000) - T[26-35] 1.7E-54 - T[49-60] 1.7E-54 - T[61-83] 1.7E-54 - T[115-128] 1.7E-54 - T[140-159] 1.7E-54 - T[236-246] 1.7E-54
ProSitePatterns	Actin_CS (IPR004001) - T[53-63] .
ProSitePatterns	Actin/actin-like_CS (IPR020902) - T[104-116] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ACTG_HUMAN	97.154 %	504	0
ACTB_HUMAN	97.154 %	503	0
ACTH_HUMAN	93.469 %	484	1.25E-174