- Region 'REG00000888' >
- Clone 'cima877974' >
- Transcript 'Moocul.CG.ELv1_2.S99...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S99657.g08730.02.t
Possible name(s)
COL1A2; COL2A1; EDA
Gene model
Location
S99657 [13,498 / 17,212]
Amino acid sequence
Length: 397
>Moocul.CG.ELv1_2.S99657.g08730.02.p
MMMFVCRQYWAVGTYRHRIALVCSNGEMNMAEKENLHQQEHSLFDYEKNQTSNNAKKKLS
SPRLARIFQRKYYLSLSCILMSALLFLFSICFGAALLVKLSSEISQLKSDFLDLQAEVDR
SAGINTVALAEHGYELVQNSDSTINDDEDALLWLNQLTSEDVSKLATPRVKREVTGFAQA
QNTKSDKRGKRQAVRGPPGRDGRDGRDGAKGPMGPPGIQGSPGKSIIGPQGSAGPPGIQG
VPGLQGERGQIGPPMTFDVIHIHGDGSSGVRSSENGLLTHWMEDWSTNSNYLLFPHNGTL
QVLSGGIYFIYSQILAVNSGTSYTSHEMKVNGKTFLRCKRSARVSTCFTSGVRKLNKNDN
VYVVMTYPETQVDMLKDDSFFGLVKWSDENGHTNDEL
Nucleotide sequence
Length: 2,003
>Moocul.CG.ELv1_2.S99657.g08730.02.t
CCTCGCTTATCTTTAGGCCTATCACGATGCTCTCTTCTTTGTACCGATAATTTTTGGAAG
AATATGTGATGAACAGTTTAATAAATTTAAGGAATCTAAGGTCTGCAATTACTTTGTCTG
TTAGTGCTGGTATGGTATATTTTAACACGTTGACTGCTGTTTTATGACTTACCTGGCGTG
TGCTGGATAATGATGATGTTTGTCTGCAGACAATACTGGGCTGTAGGCACGTACCGACAC
CGTATCGCCCTTGTGTGTTCAAATGGTGAAATGAATATGGCTGAAAAGGAAAATTTACAC
CAACAAGAACATTCTCTCTTTGATTATGAGAAAAACCAAACAAGCAACAATGCAAAGAAG
AAGTTGTCTTCACCTCGTCTTGCTCGAATATTTCAAAGAAAATATTATTTATCACTGTCA
TGCATTTTAATGAGTGCTCTTCTATTTCTTTTTTCAATCTGCTTTGGTGCTGCACTGTTG
GTAAAATTATCATCTGAAATATCTCAACTGAAATCAGATTTTCTTGATCTTCAAGCAGAA
GTGGATCGTTCAGCTGGTATAAACACTGTTGCATTAGCCGAACATGGCTACGAACTTGTT
CAAAACAGTGACAGTACTATTAATGATGACGAAGACGCGCTTCTTTGGTTAAATCAATTA
ACTTCTGAAGATGTCAGCAAGTTAGCGACACCTCGTGTAAAAAGAGAAGTTACAGGATTT
GCTCAAGCGCAAAACACAAAGTCCGATAAGAGAGGCAAACGACAAGCTGTTCGAGGTCCA
CCTGGTAGAGACGGCAGAGATGGTAGGGATGGCGCCAAAGGACCAATGGGGCCACCTGGT
ATACAAGGTTCACCTGGGAAGTCCATAATTGGGCCACAGGGGAGTGCTGGTCCGCCTGGT
ATTCAAGGCGTTCCGGGTTTACAGGGAGAAAGAGGACAGATAGGTCCACCAATGACATTT
GACGTTATTCATATTCATGGAGATGGTTCTTCTGGTGTCCGGTCAAGTGAAAATGGACTT
TTAACACATTGGATGGAAGACTGGAGTACCAATTCAAACTATTTACTGTTTCCACATAAT
GGCACACTTCAAGTTTTATCTGGTGGCATTTATTTTATTTACAGCCAGATACTTGCTGTT
AATAGCGGAACATCCTACACAAGTCATGAAATGAAAGTTAATGGTAAAACTTTTCTCCGC
TGTAAAAGAAGTGCACGAGTTAGCACCTGCTTCACTTCAGGTGTTCGTAAATTGAACAAA
AATGACAATGTATATGTTGTCATGACATATCCTGAGACTCAAGTTGATATGCTCAAAGAC
GATTCGTTTTTTGGACTCGTTAAATGGTCAGACGAAAATGGCCATACAAATGATGAGCTT
TGATCATTTTTCATGCTGCTAAAACGTCTAAACTGTGCTCTTATTTTGTAGGAATATTCT
CGTTTTTTTTATAAATATCCATACTGATGATTTCCTTTTTTTATAAATATTTGAATGTCT
CATGTCAACAACTTTTTTTCTACTTATTTCATGTATTTTTTTTTCTTACTGCCAAGACAT
TCTTATTCTCACTGCCTACATATATGCAAAAGTTGCTTAGATTTATCCATATTTTTACGG
TTTTTGTACCAAAATTTTTACATTTGTGTAACAAATTTCCAGTTTTTTTAACGATTACAC
GACACATATTTTATGTTGCATTTGAACAATCATGAACTTTTTAGTTTGTTTGGTACCGAA
ATGAATATTGTATATTTTAATTCCATTTATCAATTTACACATTCAGCAACTTTCATGTGT
TTTTATGTTTGTTTTATTTTTACAGTTGGAAGCAGTAATTGTTAATGAAATTGTATATTT
GGGTGCTGTCTAATGGAAACTGTGCTGTTTTTTAATTCCTGTGCATTCAAAATACTTCTT
GTTCCATATTTTACGTACTGGTTGTTAAAATAAAGTGTTACTGTTCCATTTAATGTGTTA
GTTTTCTTTAATACAAAGCGAAA
| Pfam |
Collagen (IPR008160) - T[196-254] 3.7E-9 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[258-390] 3.3E-24 |
| ProSiteProfiles |
TNF_dom (IPR006052) - T[259-385] 9.211 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[276-387] 6.73E-21 |
| Pfam |
TNF_dom (IPR006052) - T[281-385] 1.8E-5 |
| Protein Name | Identity | Bit Score | e-value |
|---|