- Region 'REG00001543' >
- Transcript 'Moocul.CG.ELv1_2.S72...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S72178.g04910.01.t
Possible name(s)
LARP6; LARP7; SSB
Gene model
Location
S72178 [3,586 / 5,277]
Amino acid sequence
Length: 275
>Moocul.CG.ELv1_2.S72178.g04910.01.p
MSRFRTTRKSSDSDSGISSICDEGSEDLPRAIDDSLRQYEIPSKITQQRIISQVEYYFSD
EYLVKDAYFLRQIRRKKEGYLSTKLITNFKKLRKMVRDVRVTTYCLRKSNLLHVNEEGTK
VKRKVPISDNLLRITSAHRTVTVRNIFPQNASIEKLTKHFVVYGELVSVRIAKSDKMILC
GMGNERTMHAHYGVIEFELLSAAKAACLDTIYMVKLMSEENNTNCKRDKNSLSQSYEMWI
HSLTTTKAECDSSEDEMLIKDVFNLVLSRTASINF
Nucleotide sequence
Length: 919
>Moocul.CG.ELv1_2.S72178.g04910.01.t
ATGAGCCGGTTTCGAACCACAAGAAAGTCGAGTGATTCTGACAGTGGAATATCTTCAATC
TGTGACGAAGGCAGTGAAGATCTACCACGGGCGATCGACGATTCACTGAGACAATACGAA
ATTCCGTCAAAAATTACTCAACAAAGAATCATCTCTCAGGTTGAATATTATTTCTCTGAC
GAATACCTGGTGAAAGATGCTTACTTTCTACGACAAATTCGACGAAAGAAAGAAGGATAT
TTGAGCACGAAGTTGATCACAAATTTTAAGAAGCTTCGAAAAATGGTGAGGGATGTTCGA
GTGACAACTTACTGTCTTCGAAAGTCGAATTTGTTGCACGTAAATGAAGAAGGAACGAAG
GTTAAACGTAAAGTGCCAATCTCCGATAATTTGCTAAGAATAACTTCTGCGCATCGAACC
GTGACTGTGCGCAATATCTTCCCGCAAAATGCAAGTATTGAAAAGTTGACTAAGCATTTT
GTGGTTTATGGCGAATTGGTGTCTGTTCGAATAGCGAAGTCGGATAAAATGATATTATGT
GGAATGGGCAACGAAAGAACTATGCATGCGCATTACGGCGTCATCGAATTTGAATTATTA
TCTGCGGCTAAAGCAGCATGTTTGGACACTATTTATATGGTTAAATTAATGTCAGAAGAA
AATAATACAAATTGCAAACGCGATAAAAACTCACTCTCACAAAGCTACGAAATGTGGATT
CACTCATTGACCACCACAAAGGCTGAATGTGATTCCAGTGAAGATGAGATGCTCATCAAG
GATGTATTTAATCTTGTCTTATCCCGAACTGCCAGCATAAATTTTTAAAAACTTGTAAAT
GTGTGTACAACAGCACATGTATTTCTGTTTCTGTGACTGTAAACTATAACTTTGCTGATA
AACCGACATCGGATGCAAT
| ProSiteProfiles |
La_HTH (IPR006630) - T[40-131] 21.473 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[42-127] 3.9E-21 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[43-131] 1.6E-23 |
| SMART |
La_HTH (IPR006630) - T[44-124] 1.7E-20 |
| Pfam |
La_HTH (IPR006630) - T[50-107] 1.9E-15 |
| PRINTS |
Lupus_La (IPR002344) - T[53-70] 6.7E-7 - T[79-94] 6.7E-7 - T[110-123] 6.7E-7 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[130-207] 4.12E-7 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[133-240] 1.5E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LARP6_HUMAN | 30.102 % | 97.1 | 8.1E-23 |