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TRANSCRIPT CARD

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  1. Molecular Tool 'Tbx2/3 shRNA (José-Edwards 2013)'
  2. Transcript 'Moocul.CG.ELv1_2.S72...'

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S72096.g04887.01.t

Possible name(s)

LEF1; TCF7; TCF7L2

Location

S72096 [48,230 / 52,863]

Sequences

Amino acid sequence

Length: 668

>Moocul.CG.ELv1_2.S72096.g04887.01.p
MNGTTHSFPLLLCARQHMQLLPAPTSKVSPYHPYSIPNPYLLPYGTPPSEIDGKTGLPRS
HPDIPSMYPLPGNLGQIPHPLAPWVSPGSMYPMCTASTMAATMLRYQHPFAAAFSVGTTG
ASVAANMPRFPLSAPHGMHPSMLGHAGLGNGGMPGMGAGSQHPKLDLEKHKHSKGDHHGH
HSEKERKSDRPYVKKPLNAFMLYMKEQRAKVVAECTLKESAAINQILGRKWHSLSRDEQQ
KYYEMARKERQLHMQLYPGWSARDNYGKRKKRKKEKSQGECTAQNSKKCRAVFGLDQQHL
WCAPCRRKKKCIRYQHDGDDSGSEYEDMGSPSSPPSMQDAFSQRRPNNPFDVLSSTANPL
NPQQSIINGHQNGLPHDSAFSGANRPSSNSPPHSMMVKEEVRTSPDMVNGTNNYNNSYSQ
STKQHGKDSGAPVQESRSSPPNNAVVSHSTTGNTNSNSLFGHSVEKTLMKQNSTQSSHAV
SNTHRTASSSNHHHTKTSSSSSCLQDSGHSSLSSSSGSPNNVTSRVNEKSRLSDQSNSSR
EYHPYKNNTSGPSTPRMKSINSSGTNPFLPPSSGNSPLLSPNSMGFNPHSPRTAGTHPFM
PPFSPYFQIQMAAANFMSPASPIGLPSLTGLSPMMNGLNSGTSGSSVTSGHGGQSTSRHH
GSAVEGKS

Nucleotide sequence

Length: 2,648

>Moocul.CG.ELv1_2.S72096.g04887.01.t
ATGAATGGCACAACACATAGTTTCCCACTGTTGTTATGTGCGAGACAACACATGCAGTTG
TTGCCTGCACCAACGTCAAAAGTGTCTCCATATCATCCCTACAGCATCCCGAATCCATAC
TTGCTACCTTATGGAACCCCTCCATCCGAAATCGACGGAAAGACAGGCTTGCCTCGGTCA
CATCCTGATATTCCCAGCATGTACCCACTTCCTGGAAACCTTGGTCAAATACCACATCCC
CTTGCACCATGGGTTTCACCAGGGTCAATGTACCCGATGTGCACCGCTTCAACGATGGCA
GCAACAATGCTTCGCTATCAACATCCATTTGCTGCAGCATTTTCAGTTGGCACAACCGGT
GCCTCTGTGGCCGCTAACATGCCTAGATTTCCACTTAGTGCCCCACATGGTATGCACCCA
TCTATGCTTGGTCATGCTGGACTCGGTAATGGTGGAATGCCAGGAATGGGGGCAGGAAGT
CAACACCCAAAACTCGACTTGGAAAAGCACAAGCATTCAAAAGGTGATCATCATGGACAT
CACAGTGAGAAAGAGAGGAAGTCTGACAGACCGTACGTGAAGAAACCATTGAACGCATTC
ATGTTATACATGAAAGAACAAAGAGCAAAAGTTGTGGCTGAATGTACTTTGAAAGAAAGT
GCTGCAATCAATCAAATACTTGGACGAAAGTGGCATAGTTTGTCGCGCGATGAACAACAG
AAATATTACGAGATGGCAAGAAAAGAACGTCAACTTCATATGCAGTTGTATCCTGGATGG
AGTGCTCGAGATAATTATGGTAAACGAAAGAAGAGGAAAAAGGAAAAGAGCCAAGGAGAA
TGTACAGCGCAAAACTCTAAGAAATGTCGTGCCGTGTTTGGTTTGGATCAGCAGCATTTG
TGGTGTGCTCCATGCAGGAGGAAGAAGAAGTGTATCCGCTACCAACATGATGGCGATGAT
TCTGGAAGCGAATACGAAGATATGGGAAGTCCGTCATCACCACCGAGCATGCAGGATGCC
TTCAGCCAACGTCGGCCCAACAATCCATTTGATGTCCTTTCAAGCACTGCAAACCCCCTA
AACCCTCAACAGTCAATCATAAATGGTCATCAAAATGGTTTGCCACATGATTCTGCATTC
TCTGGTGCCAACCGGCCATCTTCCAACAGTCCTCCACACAGCATGATGGTCAAGGAGGAA
GTTCGAACCTCACCAGACATGGTGAATGGCACAAACAATTATAATAATTCATATTCTCAG
TCAACCAAGCAACATGGGAAGGATAGCGGTGCACCGGTGCAAGAAAGCAGGAGTTCCCCA
CCTAACAATGCAGTTGTGTCGCATTCAACAACTGGCAACACCAACAGCAATTCGTTGTTT
GGACATTCAGTGGAAAAAACATTGATGAAACAAAACAGCACTCAGTCATCACATGCGGTC
AGCAACACACATCGCACAGCCTCTTCGTCAAATCATCATCATACCAAGACTTCCAGCAGC
AGTTCTTGTCTTCAAGACAGCGGTCACAGCTCATTATCATCAAGCTCAGGTTCACCTAAC
AACGTAACCAGCAGGGTTAATGAAAAATCTCGCCTATCTGATCAAAGTAATTCTAGCCGG
GAATATCATCCATATAAGAACAATACCAGTGGTCCATCAACCCCGCGCATGAAATCGATA
AATTCGAGTGGAACAAATCCATTTTTGCCTCCATCATCTGGCAATTCTCCATTGCTATCT
CCCAACAGTATGGGGTTTAACCCACATAGTCCGCGTACCGCTGGTACTCATCCTTTCATG
CCACCATTTTCACCATATTTTCAAATTCAAATGGCTGCTGCTAATTTCATGTCACCGGCA
TCACCTATTGGGTTGCCATCCTTGACCGGACTTTCCCCAATGATGAATGGTTTGAATTCA
GGAACATCTGGGTCATCAGTGACCTCTGGACATGGTGGTCAATCTACATCACGGCACCAT
GGGTCAGCTGTAGAGGGGAAATCTTGATGTGAAAATATCAATATCTCGCATGATGATCAG
TAGCCTGATGCCCCAACGAGACGACCCGCGTGGCAGAACAGGAGAAGCCACATTGCTGCA
CACGGAAGAAATATATTTGTTGCCAAACAGTTAAAACTTTTATCACAACATAAAGCTAGT
TTTATATCTTGTTAGGATTTTATGGCACTGTTCAAGAATCAATTTGAACGAAAAAAAATT
GTTCCATTTTACTGCAAGTTTTTAAAATACTATTATTATGGATTGCAATTTACCTCACAA
ATCACTACACGGTGCTCAAACCTGTCGACAATCAATCAAGTTGTGCTAAATAGACGTAGA
AAGCAATCCAATCTTAATGTTAACTAAATTTTAATATGGGAATTTTATGCAACGTTATCT
ATGTGCCTTGCTGAAAATCTTAGTCAAAAATCAATGGAATAAAGTGTTTCTGCCATTAAC
AATTTCTGTACTATTTTTTCCTTTTATTCTGAGCAATTGTCGTTTTCATATGAAAGAGTT
TTTTGTTGTCTTCATACTTTGATGTATCATATTATTGTCACTTTATTACCATTATACTTT
TATAATAATCGTATGTCAATTTGCATTTGAAATTTTTTACTATCTTAAATAAAAACATGC
GAAAAATA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[181-260] 1.44E-20
SMART
HMG_box_dom (IPR009071) - T[192-262] 1.1E-20
Gene3D
HMG_box_dom_sf (IPR036910) - T[192-276] 3.2E-24
ProSiteProfiles
HMG_box_dom (IPR009071) - T[193-261] 15.972
Pfam
HMG_box_dom (IPR009071) - T[193-260] 3.4E-22

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TF7L2_HUMAN 50.502 % 239 4.0E-70
LEF1_HUMAN 48.43 % 186 9.04E-53
TF7L1_HUMAN 50.644 % 187 1.4E-51