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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S1...' > 
  2. Transcript 'Phmamm.CG.MTP2014.S5...' > 
  3. Region 'REG00000137' > 
  4. Molecular Tool 'cilv026m13-MO (Hamada's MO)' > 
  5. Transcript 'Moocul.CG.ELv1_2.S65...'

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S65129.g04213.01.t

Possible name(s)

SOX14; SOX2; SOX21

Gene model

Moocul.CG.ELv1_2.S65129.g04213

Location

S65129 [48,086 / 50,379]

Sequences

Amino acid sequence

Length: 290

>Moocul.CG.ELv1_2.S65129.g04213.01.p
MSDESGHSDYENQDECIDVTSPMPSPVQLSGKENGHVKRPMNAFMVWSRGQRRKMAQDNP
KMHNSEISKRLGAAWKLLSESEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKSLLKPKD
RMAFPMFHQSLSNSPTSDVSTAALNMAAQHAAVAQLALDPIVSEKARALLPPTSSYLDFT
SQAPSIARLAAAVRDSSFYNPKCSVYGSRSYANAITSSALYQSPTTLASSDPPSPVALPH
PFIFPGSSSPTYSSSPPLMQRPLAYIFLPGGGNHLKSPLDYYTPMALPAM

Nucleotide sequence

Length: 2,095

>Moocul.CG.ELv1_2.S65129.g04213.01.t
ATTACTTTTTTATTTTATAGAGAAGTGGGAACCTGCGCATAAAGTAAGATTATTTTTGAC
GATATAAAGACGACTGGTGTACTTTCGACGAAACTGTTCACTGTGTAAAGAAGATTGTTT
TATTTTTGACGAAAATCACCCTGTGATTTCAACACATCCATAACAATGTCTGACGAATCT
GGTCATTCCGATTACGAGAACCAAGACGAGTGCATCGACGTAACCTCTCCCATGCCCTCA
CCTGTCCAATTGTCCGGTAAAGAAAATGGACATGTCAAGCGACCAATGAACGCATTCATG
GTCTGGTCACGGGGACAGAGGAGGAAGATGGCGCAGGACAACCCCAAAATGCATAACTCC
GAAATATCAAAGAGGCTCGGAGCCGCGTGGAAACTTTTATCCGAGAGCGAAAAACGACCT
TTCATTGACGAAGCCAAGAGACTTCGCGCTCTTCACATGAAGGAACATCCCGATTACAAA
TATCGACCACGACGCAAGCCAAAATCCTTGTTGAAACCAAAAGACAGAATGGCATTCCCC
ATGTTCCACCAATCGCTCTCAAACTCTCCCACTAGCGACGTCTCAACCGCAGCCCTCAAC
ATGGCCGCCCAACACGCAGCAGTTGCTCAACTTGCGCTTGATCCAATTGTGAGTGAAAAA
GCACGTGCTTTGTTGCCGCCAACATCTTCGTATTTGGACTTCACATCACAAGCGCCATCA
ATCGCCAGGTTGGCTGCCGCAGTACGCGATTCATCATTTTATAACCCGAAGTGCAGTGTG
TACGGTTCCAGGTCATATGCAAACGCAATAACAAGCAGTGCATTGTACCAATCACCAACC
ACACTCGCATCAAGTGATCCACCATCACCAGTGGCTCTTCCTCATCCATTCATCTTCCCA
GGATCATCTTCACCGACTTACAGCTCCTCACCGCCATTGATGCAACGTCCACTCGCCTAC
ATCTTCCTCCCAGGAGGTGGAAACCATTTGAAATCACCACTTGATTATTACACGCCAATG
GCTTTGCCGGCAATGTAAATGATCATACCGAACAATCACGACGACGCCCCGTCCGCCTCC
GCTATGAGCGCGTGCGCAGACGGGAGCCGCTTTCAGTAGTGGCTGACCCTTATCGAGTAA
TGAGGGACGCAAATTTTTATATTGCCATTTCTATTATTATTATTTTCTTATTTTTTTTAT
TTTTAAATTTATTATTTTATATTTCGCCAAATGACGACGAATCCACTTCGGATTCTGATT
ATTTTTGATGTTTGTATATTGCTTTTTAACAAACGGTGTTTGTGGTGTGATATTTCCTCA
TGAGGACCCCAACAATCCTCTTCGACGATCTTTTGTGTCCGCACAAAGTAACTTGTTGCA
TAGCAACAACAGATTGACTTGTACCACTCCGAAGCAGGGCTTAATGAACTGCTGGAGTGT
TTTAAAGTGGGTGATAGTGATTAACAACGCGTGCCAAACTTTCATAAGTTCCATTAAAGC
GTTTTTAAATTACATTTTGACAAAGACTGTTTGTGATATTTTTGTTTATTACAATCTTCT
TCAGTCTGCTTTTCATCTTTCTGAGTGTTTATTACGTCATAATGTACTTGTGATGAAAGC
CAAGAAATATAACGAGTTTTTAAGAATCAACTTTTAATTTTTGGATCGAATTTTTCGGTA
CAATGCATTCTGTAGCCGCCCGAGGCTTTGATTCTAATAATAAAATCATACCTTCACGAT
TTCTTGAAGCTTTTCACCAAATATTTCCAACTTTAATTGTTGAGATACGCCATATGAATA
AATTGCTAAGATAATTACATGTTATATTGTGTTATTGTACTTATGCAGAACGATCTTAAT
TAATGAAGCACTGTATTTTGTACTGTGTGATTCCATTGTGTTATAAGTACTGTTTATGAC
GTCATAAATGCTTAGTGCGGTGGCTAACCTTCACAATCTGTGTTTATAATTTGGAGGATT
TCTTTTGACTCTGGCATCGCCAGCCGCGTTTTCAACTCTACTGTTTGTTATTTATGATAT
GACGAAGGACACATTGTGCCCTGATACAAAATAAAAACACCAAAAATAAAAACAA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[20-109] 3.93E-30
Gene3D
HMG_box_dom_sf (IPR036910) - T[35-112] 2.8E-32
SMART
HMG_box_dom (IPR009071) - T[36-106] 2.0E-28
ProSiteProfiles
HMG_box_dom (IPR009071) - T[37-105] 22.851
Pfam
HMG_box_dom (IPR009071) - T[37-105] 3.0E-27

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX2_HUMAN 87.64 % 168 2.58E-50
SOX21_HUMAN 89.011 % 173 1.07E-52
SOX14_HUMAN 48.207 % 184 1.8E-57