- Transcript 'KH2012:KH.S544.3.v1....' >
- Transcript 'KH2012:KH.L152.2.v1....' >
- Region 'REG00000198' >
- Transcript 'KH2012:KH.C1.1016.v2...' >
- Transcript 'Moocul.CG.ELv1_2.S23...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S2310.g00031.01.t
Possible name(s)
LRP1B; LRP2; SORL1
Gene model
Location
S2310 [380 / 2,184]
Amino acid sequence
Length: 464
>Moocul.CG.ELv1_2.S2310.g00031.01.p
MNKQFNSQDELSTKYNTMLAVYKIFVVVVILGITTGQRKTACGPHEFVCDSGKCIQQNHV
CDNIKDCTNGEDEDVNVCRNITSFCWSWQQACGEDGRCKPHSFQCDNGKCIEIEDGCNRI
DDCGDGSDERRGLIGFKCVFINGSDLCNLPARLINDGLVHCEKQLDEYESNIVANAFECF
DKSTNISLRQQCNGVIDCPDLSDECPCENKARDDDPLHICSRFCSPLNPYVSKTCTAKTV
SCDGGKNEVDTDKVCDGVRNCADGLDERFCAYSKNYKKLHQEISCIGNIYGTENITAKLC
DYIPECFDLSDECNCPGNSPAYCKLGAKLTSNGQHHYICNNTDGRSYSLTAQDICNGYWS
PCSPRLVDEESGCGDRLYCKEEAGQQSIANILKCDGFKQCDDGSDEDDCKNRYQCEEGPP
FSVPLNYVSDGISDCADASDECPYDLDDKIVSSRKEMINDTFLR
Nucleotide sequence
Length: 1,392
>Moocul.CG.ELv1_2.S2310.g00031.01.t
ATGAATAAACAGTTTAATTCACAAGATGAATTATCAACGAAGTACAACACGATGCTGGCA
GTTTATAAGATATTTGTGGTTGTGGTAATCCTGGGAATAACTACGGGGCAACGTAAAACA
GCATGCGGTCCACACGAGTTCGTTTGCGATTCCGGCAAATGCATCCAACAGAATCACGTG
TGTGATAACATCAAAGATTGTACAAATGGTGAAGATGAAGACGTAAACGTATGCAGGAAC
ATCACTTCATTTTGTTGGAGTTGGCAGCAAGCGTGTGGAGAAGACGGACGATGCAAACCA
CACAGTTTTCAGTGCGATAATGGAAAGTGCATTGAAATTGAAGATGGATGTAATCGTATT
GATGATTGTGGGGATGGTTCGGATGAAAGGAGGGGATTGATCGGCTTTAAATGTGTTTTC
ATTAACGGATCTGATCTTTGTAATCTTCCAGCGAGGTTAATTAATGATGGACTTGTACAC
TGTGAGAAGCAGCTCGATGAATATGAATCAAATATAGTGGCTAACGCATTTGAATGTTTC
GACAAAAGTACAAATATTTCATTACGTCAGCAATGCAATGGGGTTATTGATTGCCCAGAT
CTTTCTGATGAATGTCCATGCGAAAATAAGGCAAGAGACGATGACCCTTTGCATATCTGT
TCAAGATTTTGTTCACCTTTAAATCCGTATGTGTCAAAAACCTGCACGGCCAAAACTGTA
TCGTGTGATGGCGGCAAAAACGAGGTCGACACCGATAAAGTTTGTGACGGTGTTCGGAAT
TGTGCTGATGGTTTGGATGAAAGATTCTGTGCTTATTCAAAAAACTACAAAAAATTACAT
CAAGAAATATCATGCATTGGAAACATTTACGGAACCGAAAATATCACAGCTAAACTTTGC
GACTACATTCCCGAGTGTTTCGACCTATCTGACGAATGTAATTGTCCTGGAAACTCTCCA
GCCTATTGCAAACTTGGTGCAAAATTGACATCGAATGGGCAGCATCATTATATCTGCAAC
AACACGGATGGCCGAAGTTACAGTTTGACCGCTCAAGACATCTGCAACGGCTACTGGTCA
CCGTGCAGTCCCAGGTTGGTGGATGAAGAAAGTGGATGTGGTGATAGATTGTATTGTAAA
GAGGAGGCTGGGCAACAGAGCATCGCCAACATTCTTAAGTGCGATGGTTTCAAACAATGT
GATGATGGATCGGATGAAGATGACTGCAAAAACAGATATCAGTGTGAAGAAGGTCCTCCA
TTTTCCGTCCCCTTGAATTACGTCTCGGACGGAATTAGCGACTGCGCTGACGCAAGTGAC
GAATGCCCTTATGATCTAGACGATAAAATCGTATCATCTCGAAAAGAGATGATTAATGAT
ACTTTTCTTAGA
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[39-74] 4.32E-9 - T[97-131] 1.27E-8 - T[175-207] 2.36E-5 - T[231-270] 1.44E-5 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[41-76] 2.3E-9 - T[97-130] 8.0E-9 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[41-80] 9.6E-10 - T[97-134] 1.7E-7 - T[174-209] 0.026 - T[234-272] 1.2E-5 - T[372-411] 0.024 - T[414-444] 1.6 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[41-79] 12.025 - T[97-139] 11.775 - T[160-208] 8.625 - T[234-271] 9.088 - T[372-410] 9.15 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[42-74] 1.57276E-6 - T[98-130] 5.45265E-7 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[52-73] 5.6E-21 - T[108-129] 5.6E-21 - T[246-267] 5.6E-21 - T[291-312] 5.6E-21 - T[385-406] 5.6E-21 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[54-78] . |
| Protein Name | Identity | Bit Score | e-value |
|---|