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- Transcript 'Moocul.CG.ELv1_2.S12...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S129936.g15237.01.t
Possible name(s)
LEMD3; RBM23; RBM39
Gene model
Location
S129936 [23,365 / 24,805]
Amino acid sequence
Length: 479
>Moocul.CG.ELv1_2.S129936.g15237.01.p
MADEIDIEAMLEAPFKRDEKNGRDSSSRRTSSKKSSSRHRSRSRERKHRRRRSRSRSRDR
QRKRRSRSRERRRSRDRRSRSKDRENRDLVVPGIEPVRAARSPSPPDRDARTVFCMQLSQ
RIRSRDLEDFFSSVGTVRDVKLIADKHSKRSKGIAYVEFKEMESVPLALGLSGQKLLGVP
MIVQPSQAEKNRVAAAAANNIQRAALGPTKLYVSELHLNITEEMLKGIFSPFGRLEAVQM
IREQGNDTSSGSGFITFSDAESAKKAMQQLNGFEIAGRAMKVTSVTDPSVNPQFAFAMLG
GQGGPSFLDNEVVERGGIDLGTTGRLQLMAKLAQGTGLHVPQVPQQGSMDGGQHSIPAAA
PPSGSGDRPPIATTCFQLTNMFDPKSESDPQWKEDIRDDVIEECSNFGKVLHVFVDENSE
GNVYVKCDNSDAAAKSVSSLHGRYFAGKMITAAYVPVVNYHALFPDSTTASIPLRPSNR
Nucleotide sequence
Length: 1,440
>Moocul.CG.ELv1_2.S129936.g15237.01.t
ATGGCGGATGAAATTGACATAGAGGCAATGCTGGAGGCTCCGTTTAAAAGGGATGAAAAG
AATGGAAGAGATTCATCTTCCAGAAGGACATCATCCAAGAAGAGTAGCAGCCGACATAGA
AGCAGAAGTCGTGAGAGGAAGCATAGAAGACGGAGATCAAGAAGCAGAAGTCGCGATCGC
CAACGGAAACGAAGATCAAGGTCACGAGAACGTCGAAGGTCACGTGATCGACGGTCACGG
TCGAAAGATCGCGAGAATCGGGATTTGGTAGTGCCTGGGATTGAACCTGTGCGTGCTGCA
CGCTCACCAAGTCCACCAGATCGCGATGCCAGAACGGTTTTCTGCATGCAATTGTCGCAG
AGAATTCGATCACGAGATTTGGAAGATTTTTTCTCGTCCGTTGGTACCGTTCGAGATGTC
AAGTTAATTGCTGATAAGCATTCAAAAAGATCAAAAGGAATTGCTTATGTTGAGTTTAAA
GAAATGGAGTCTGTTCCACTGGCTCTTGGATTAAGTGGTCAAAAATTGCTTGGAGTGCCG
ATGATTGTCCAGCCATCGCAAGCTGAGAAGAACAGAGTTGCTGCGGCTGCTGCTAATAAT
ATACAACGTGCAGCGCTTGGACCAACGAAACTTTATGTGAGCGAACTTCATCTAAACATT
ACTGAGGAAATGCTTAAAGGAATTTTTAGTCCTTTTGGGAGACTTGAAGCTGTACAAATG
ATTCGGGAACAAGGCAACGATACTTCTAGTGGAAGTGGATTTATCACTTTCAGTGATGCA
GAGTCGGCCAAGAAAGCCATGCAACAATTGAATGGTTTTGAAATAGCTGGTAGAGCTATG
AAAGTGACAAGTGTTACAGATCCATCTGTTAACCCGCAGTTTGCATTTGCTATGTTGGGT
GGACAAGGCGGACCTTCATTCTTAGACAATGAAGTTGTAGAACGTGGCGGAATTGATTTG
GGTACAACAGGAAGACTTCAACTTATGGCAAAACTTGCACAAGGTACTGGTCTGCATGTG
CCACAGGTACCACAGCAAGGCAGCATGGATGGTGGACAGCATTCTATTCCTGCTGCAGCA
CCTCCTAGTGGTAGTGGTGACAGACCACCAATTGCAACGACATGCTTTCAATTAACGAAC
ATGTTTGATCCAAAAAGTGAATCTGATCCGCAGTGGAAAGAGGACATTCGTGACGACGTG
ATTGAGGAATGTTCAAATTTTGGAAAAGTTCTGCATGTTTTTGTTGATGAGAATTCGGAA
GGAAACGTTTATGTGAAATGTGATAATTCTGATGCAGCAGCAAAGTCTGTATCGTCATTA
CATGGGCGTTATTTTGCCGGTAAAATGATTACTGCAGCTTATGTACCGGTTGTTAATTAT
CATGCTTTGTTTCCTGATTCTACAACAGCATCAATTCCTCTCCGGCCATCAAATCGATAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-194] 2.8E-23 - T[195-290] 1.5E-21 - T[368-479] 1.4E-33 |
| TIGRFAM |
RBM39_SF (IPR006509) - T[18-466] 3.2E-125 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[107-289] 1.89E-41 - T[368-456] 2.31E-17 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[111-188] 14.692 - T[209-287] 17.984 |
| SMART |
RRM_dom (IPR000504) - T[112-184] 5.1E-15 - T[210-283] 5.5E-22 - T[375-453] 0.14 |
| Pfam |
RRM_dom (IPR000504) - T[113-178] 8.4E-11 - T[211-280] 2.2E-18 |
| SMART |
RRM_dom_euk (IPR003954) - T[210-283] 0.95 - T[375-453] 0.97 |
| Pfam |
RBM39_linker (IPR029123) - T[314-392] 9.8E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MAN1_HUMAN | 41.964 % | 107 | 1.07E-24 |
| RBM39_HUMAN | 54.854 % | 444 | 2.74E-152 |
| RBM23_HUMAN | 47.79 % | 293 | 6.31E-95 |