Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S124689.g14596.01.t

Possible name(s)

NR1I2; NR1I3; VDR

Gene model

Moocul.CG.ELv1_2.S124689.g14596

Location

S124689 [1,769 / 9,374]

Sequences

Amino acid sequence

Length: 221

>Moocul.CG.ELv1_2.S124689.g14596.01.p
MAMAAARLSSSSSLSSSSDRRCSLDSTDTKSPTISEKSTEKQKAEKICVVCGDSATGIHF
AAMTCEGCKGFFRRSMKKEVQFLCAFDNNCAISRSNRKHCQSCRLNKCLAVGMDASLIMS
DESVNRKRELIRQNREKRALVRAKKEQQELEMQMKDNKISKENSQIRMTMADKLLIETLL
KGHNASYDFSYEEYETFRGTEVSLCAFLSLLTTVNMYNNIP

Nucleotide sequence

Length: 801

>Moocul.CG.ELv1_2.S124689.g14596.01.t
TTTAGCATGATATATTATGATTAATTTTAATGCCATTAACTGTACTACATTTAACTGTTG
AAACATATTAGCATGGCTATGGCAGCAGCAAGATTGTCTTCTAGTTCTTCATTAAGCTCA
TCCTCTGATCGAAGATGTAGTTTGGATAGCACTGATACCAAATCCCCAACCATCAGTGAA
AAAAGTACAGAAAAGCAGAAAGCAGAGAAAATATGTGTCGTCTGTGGAGACAGTGCTACT
GGCATTCACTTTGCAGCCATGACATGTGAAGGCTGCAAAGGATTCTTCCGACGGTCAATG
AAAAAAGAAGTGCAATTTCTATGTGCATTTGATAACAATTGTGCTATAAGTCGCTCAAAC
AGAAAACATTGCCAATCATGTAGATTGAACAAATGCTTAGCTGTTGGTATGGATGCCTCG
TTAATAATGAGTGATGAAAGTGTTAATCGAAAACGGGAGTTAATTCGTCAAAATCGTGAA
AAACGTGCTTTGGTTCGAGCAAAGAAAGAACAACAGGAGCTTGAAATGCAAATGAAAGAC
AACAAAATTTCAAAAGAAAACTCACAAATTCGAATGACAATGGCTGATAAGCTTTTGATT
GAAACTTTATTGAAGGGGCACAATGCAAGCTATGACTTCTCATATGAAGAATACGAAACA
TTTCGAGGAACCGAGGTTAGTTTGTGTGCTTTCCTCAGTTTGTTAACAACGGTTAATATG
TACAACAACATACCGTAGCAATAAAAATGCCACATCAAATAAAACATTTCACTACTGTTG
GAATACAAATCTTATATGCAA

InterProScan

SMART	Znf_hrmn_rcpt (IPR001628) - T[45-116] 7.3E-33
Gene3D	Znf_NHR/GATA (IPR013088) - T[45-145] 3.3E-31
ProSiteProfiles	Znf_hrmn_rcpt (IPR001628) - T[45-120] 18.729
Pfam	Znf_hrmn_rcpt (IPR001628) - T[47-114] 3.5E-29
ProSitePatterns	Znf_hrmn_rcpt (IPR001628) - T[48-74] .
PRINTS	Znf_hrmn_rcpt (IPR001628) - T[48-64] 2.3E-17 - T[64-79] 2.3E-17 - T[97-105] 2.3E-17 - T[105-113] 2.3E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
VDR_HUMAN	41.071 %	145	2.63E-41
NR1I3_HUMAN	39.073 %	118	6.74E-32
NR1I2_HUMAN	36 %	120	4.48E-32