- Transcript 'Phmamm.CG.MTP2014.S4...' >
- EST 'AHC0AAA232YK23_RM1' >
- Transcript 'KH2012:KH.C1.250.v3....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Moocul.CG.ELv1_2.S11...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S118931.g14075.01.t
Possible name(s)
HSPG2; LAMA1; LAMA2
Gene model
Location
S118931 [2,615 / 35,643]
Amino acid sequence
Length: 1,898
>Moocul.CG.ELv1_2.S118931.g14075.01.p
MTGIYFKLLAIVTCIVTAQATDEFNLNRDEIRRSILAFRERRSIELYSEEVGEVAVHRVR
RQVFPSDDEDLDEGSGEGESSGEGDGSEPVPPDAGTGSEPVPPDAGVVQPPLTPLETTTV
IPGTIAYDWVWYRCTMNFMTSIQYTEALTDHSSAYFYEVSDKIMTSVEYSLTQTLSGYQE
VTPLMYTIDSSGNVHVLIDVGICSSTSADALRNGMYKIAESGTVGEYSVNIEGFGFRKIG
IDPGRNECGSSSEPLHEEELPPTPTTTTTTTQRPSTTTVTSKPTTRKVIPRFCSEGQATC
SNGQCIETGQICDGRTDCRDGSDENNCAGDSSRCDPTEFLCPNTGVCAMKLWRCDGDDDC
GDGFDERNCPTNSASSTCQGNEFECSVNRQCVPYSYFCDGEPDCIDGSDEDAAPVVITPP
NRMNNVTEGDTVVLECEAAGKPPPIISWRLNWGNVAPPPRVSMATKDGKGTLTINNVQKS
DQGAYTCEAINPNGSIFAIPDAVVIVQDGQPSDDDDEPLPPDVTDEDVCPDGTYMVPGGY
QKYIAQSRQNPVSPDFDVGTSPTGGSRQGGRGDFPDTGTGVSTGRGDFPGGDSRTGGRGD
FPDSGAGVSPGGDTRVFPGGDTGVSPGGDTGTGGQPSIPGDFERISGKVEVVLPEGYSTP
NGVDLCVPCFCYGVTDECMPSQDIYEDVAVNFDSPDDLGKITLKPAESEGAVPSASEPIN
RNQIVVNPAARELQLIDLSKRFLAAAHYWSLPAEFLGSKINSYGGTLTFTFSYNNSYAFA
SRPTDHSDLILEGANGKKLVFHDKDAHPEPSKTHKQAVDLIESSFTSPDGAEATHQEFIN
VLSNIDQILIRTVYDKSMLSTGIGDVRLSVALPTAKATPSAVLNNDRAMFIEECKCPPAY
TGSSCENCAEGYQRVGSRCELTYIEPTPPTDPVKEPGEIVECKAGVEGESCSKCKEEYFY
YSDDNPDGCIRCFCSGVTEQCTSALWYKSEIRPTYSSAQYFVLTNARSNRTYHDMVQITS
QSRVPVVVADLNNIRRDLYYWQLPREFTGNQISSYGGKLHYIINYETLTGGRPLTRIADV
KLIGRNMELEYRSSVHPYPDSNTPFGVLIREDNFVHFDGRQSTREELMTVLQNIRSIIIR
ASYSSAMGRAMISGVSLETALQRNTGNELAMAVERCVCPEGYTGLSCERCDNGYFHSQDG
SCVRCNCNGHSDACDPVTGACLTCRDNTLGANCEICRPGFYGDATFGTSVDCIPCPCPVL
PASWNQTQVASCTRGTNGQPICDRCPEGYEGNRCERCAIGFVSSSVHSECRKDDACQCDE
SGSLDGTCDADGKCNCKPSTTGDKCDGCKPSYFYFSVENVNGGCLPCFCMGVTTKCQSSS
YTRVTVEADMTSNYGGLAIVDNTRNMRTVEELSAPNGQEVIRKNMQSLPAGSYYWQLPDE
FRGDKVVSYGGDLTFTVSHMSFTGDQTSDSDVILIGNDIKLLATIPGDVPQRERLERKIT
FREQHWRRADGGPAGREHLLMALADVQDILIRATYSSAPSESRISAISMETASSEHLDGV
PAMEVEECICPDGYEGLSCEDCAPGFTRSGTGINLGLCAPCQCNGHADVCDSETGVCVGC
RDNTAGDFCDECMDGYYPYMRDGTIEYCRPCACPGTGDNSFSDTCEFNSDTGSLVCTACA
EGYQGDRCEDCAPGYDGNPRIAGGRCVRQSQPALRPPAVSVSPPSLEIEEGGIGRLRCDV
DSATQFNVIWRKDGQQILSSRNVYVSKQGLDFSDFRASDAGTYECVARNGDGTDSGSATV
VVRKNTPMIKVRVEEPRTQRVKVGSDVTFVCTAESKMSAYILSWSKRGVRLPRDRSTDFN
GILHISNVQESDSGTLVCTGSNMYEIDQETATLIVYRG
Nucleotide sequence
Length: 6,033
>Moocul.CG.ELv1_2.S118931.g14075.01.t
TATTAGTACAGGCTTGCAGAGTCACAGATGAAATGTAGTTTGGTCTGTGACAATAATATG
CAAGGATGTGGTCTAACCTTCTGTTAGAGGCAAAAATATGAGTTGTGTATTATTAATTCT
TGCCTTTAGATCTATTCTTGGCAGTGTAGTGTTCAGCGATATTCTTCGAATTGGGATTTA
TAATTAGTAGGTCACACTACAGCTGCGTTTGTCGCAATCTGCGTTGCGATATGACGGGGA
TATATTTCAAGCTGTTAGCGATTGTGACATGTATAGTTACTGCACAAGCAACCGATGAAT
TCAATTTGAACCGGGACGAAATCCGACGATCAATTTTAGCGTTCCGTGAGCGACGTAGCA
TCGAATTATATTCGGAGGAGGTTGGGGAAGTCGCCGTCCATCGTGTGCGGAGGCAAGTTT
TTCCGTCGGATGATGAAGATTTGGACGAAGGGAGTGGAGAGGGTGAGAGCAGTGGCGAAG
GCGATGGATCTGAGCCCGTACCACCAGACGCTGGGACTGGGTCTGAGCCTGTTCCACCTG
ACGCTGGAGTAGTACAACCTCCTTTAACTCCCCTTGAAACTACAACTGTGATACCTGGAA
CGATTGCTTATGACTGGGTTTGGTACCGTTGCACTATGAACTTTATGACATCAATTCAAT
ACACTGAAGCTCTCACTGATCATTCCTCGGCCTATTTTTACGAAGTTTCAGACAAAATTA
TGACCTCGGTGGAATACAGCTTAACGCAGACCCTCAGCGGCTACCAGGAAGTAACCCCGC
TGATGTACACGATTGATTCTTCTGGCAATGTCCACGTTCTGATCGATGTTGGTATTTGCT
CTTCAACGAGTGCTGATGCTCTGCGAAATGGAATGTACAAGATAGCTGAAAGTGGAACGG
TTGGTGAATACTCTGTCAATATCGAAGGATTTGGATTCAGAAAGATTGGAATTGACCCTG
GTAGAAACGAATGTGGAAGCTCATCAGAACCTCTACACGAAGAAGAGCTCCCACCAACTC
CAACCACCACCACAACCACTACACAACGGCCATCCACTACAACTGTTACATCAAAACCAA
CAACTCGAAAGGTCATTCCACGATTCTGCTCTGAAGGTCAAGCAACTTGCAGCAATGGTC
AATGTATTGAAACTGGACAAATATGTGATGGAAGAACTGACTGTCGAGATGGGAGCGATG
AAAATAACTGTGCAGGCGATTCTTCTCGATGCGATCCAACGGAGTTTTTATGCCCAAACA
CGGGAGTTTGCGCAATGAAGTTGTGGAGATGTGACGGAGATGATGATTGCGGTGATGGTT
TCGATGAAAGGAATTGTCCTACCAACAGCGCTAGTTCAACCTGTCAAGGAAATGAGTTTG
AATGTTCAGTGAACAGGCAATGTGTTCCGTACAGTTACTTCTGTGATGGAGAACCTGATT
GTATCGATGGAAGCGATGAAGACGCTGCACCAGTTGTTATCACGCCACCAAATCGTATGA
ACAATGTTACTGAGGGAGACACTGTTGTGTTGGAATGTGAAGCAGCTGGTAAACCTCCTC
CGATTATATCATGGAGATTAAACTGGGGTAATGTTGCCCCTCCACCGCGCGTATCCATGG
CAACCAAAGATGGAAAAGGAACGCTAACAATCAACAATGTGCAGAAATCTGATCAAGGAG
CTTATACATGTGAAGCGATTAATCCTAATGGAAGTATCTTTGCTATCCCAGATGCTGTGG
TTATTGTGCAAGACGGTCAACCAAGTGATGATGATGATGAACCACTTCCTCCAGATGTTA
CTGATGAAGATGTTTGTCCTGATGGCACTTACATGGTACCAGGAGGTTATCAAAAATACA
TTGCTCAATCACGACAAAATCCAGTTTCTCCTGATTTTGATGTGGGTACTTCCCCAACCG
GTGGTTCCCGACAAGGTGGAAGGGGGGATTTCCCAGATACTGGTACAGGAGTTTCAACCG
GACGAGGGGATTTCCCAGGAGGAGATTCAAGAACTGGTGGACGAGGGGATTTCCCAGATT
CTGGAGCAGGGGTTTCCCCAGGAGGTGACACAAGGGTTTTCCCAGGTGGTGATACAGGGG
TTTCCCCAGGTGGTGATACAGGAACTGGAGGTCAGCCATCAATACCTGGCGATTTTGAAC
GTATTTCTGGCAAAGTAGAAGTTGTTTTGCCTGAAGGGTATTCCACACCTAACGGAGTTG
ATCTATGTGTACCGTGTTTCTGTTATGGCGTAACAGATGAATGCATGCCATCACAAGATA
TCTACGAAGATGTTGCTGTTAACTTTGATTCCCCTGATGATCTCGGCAAAATTACATTAA
AACCTGCTGAGTCAGAAGGCGCAGTACCAAGTGCATCAGAACCAATCAACCGTAACCAGA
TTGTCGTAAACCCAGCTGCGCGTGAACTTCAGCTTATTGACTTGTCCAAGAGATTCTTGG
CAGCTGCACATTACTGGAGTTTGCCAGCCGAATTTTTGGGATCAAAGATCAACAGCTATG
GAGGAACGCTGACTTTCACGTTTAGTTATAACAACAGTTACGCTTTTGCTTCACGACCAA
CCGATCATAGTGATTTGATATTGGAAGGAGCCAATGGGAAAAAGTTGGTTTTTCATGATA
AAGATGCTCATCCCGAACCATCCAAAACGCACAAGCAAGCAGTGGATCTCATAGAGAGCT
CATTCACATCACCAGATGGGGCAGAGGCAACTCACCAAGAATTTATAAATGTGTTGAGCA
ACATTGACCAAATCCTCATCAGAACTGTTTATGATAAAAGCATGCTCAGTACAGGAATCG
GCGATGTGAGATTGTCAGTTGCTCTTCCAACAGCAAAAGCAACTCCCTCTGCTGTTCTTA
ATAATGACCGAGCGATGTTCATTGAAGAATGCAAATGTCCTCCCGCTTATACCGGATCAT
CATGTGAGAATTGTGCTGAAGGATATCAGCGTGTTGGTAGCAGATGCGAATTAACATACA
TTGAACCAACACCACCTACTGATCCTGTCAAGGAACCTGGAGAAATTGTTGAATGCAAAG
CTGGTGTGGAAGGTGAGAGTTGTAGCAAATGCAAAGAAGAATATTTTTATTATTCTGACG
ACAATCCCGATGGTTGTATTCGGTGCTTCTGCTCCGGTGTCACCGAACAATGCACCAGTG
CCCTCTGGTACAAAAGTGAGATTCGACCAACGTATTCATCCGCGCAATATTTTGTATTAA
CAAATGCCCGATCGAACCGGACATATCATGATATGGTACAGATCACGTCACAAAGTCGTG
TGCCGGTGGTTGTAGCTGATCTTAATAATATCAGAAGAGATTTATACTACTGGCAACTAC
CAAGAGAATTCACTGGAAATCAGATCTCATCCTACGGTGGGAAGCTTCATTACATCATCA
ACTACGAAACATTGACTGGTGGCCGACCTCTCACGCGAATCGCAGATGTTAAATTGATTG
GACGTAACATGGAGTTGGAATACAGAAGTAGCGTTCACCCATACCCGGATAGCAATACAC
CGTTTGGAGTACTTATCAGAGAGGATAATTTTGTTCATTTTGACGGGAGGCAGAGCACGC
GAGAGGAATTGATGACGGTTTTACAAAACATTCGTAGCATCATTATACGGGCATCGTACA
GTAGTGCTATGGGAAGAGCGATGATTTCTGGTGTATCACTAGAGACAGCATTACAACGAA
ATACTGGGAATGAACTTGCAATGGCTGTGGAAAGATGTGTATGCCCTGAAGGATATACAG
GACTGTCTTGTGAGCGCTGTGACAACGGATATTTCCACTCACAAGATGGCAGTTGTGTGC
GATGTAATTGTAATGGACATTCTGATGCTTGTGACCCAGTCACTGGAGCATGTTTGACAT
GCCGGGATAACACATTGGGTGCGAACTGCGAAATATGTCGCCCGGGTTTCTATGGTGATG
CAACCTTTGGAACCAGTGTGGATTGTATACCCTGTCCATGTCCAGTGTTGCCAGCTAGTT
GGAACCAAACACAGGTTGCCAGCTGTACACGCGGTACCAACGGTCAACCGATATGCGACC
GATGTCCAGAAGGATATGAAGGGAATAGATGTGAACGATGTGCGATTGGTTTTGTCTCGA
GCAGCGTCCACAGCGAATGTCGAAAGGACGACGCTTGTCAGTGTGATGAGAGCGGCTCAT
TGGATGGCACGTGCGACGCTGATGGGAAATGCAACTGCAAGCCGTCAACGACGGGAGACA
AATGCGATGGATGCAAGCCGAGTTACTTCTACTTCAGTGTAGAGAATGTTAATGGGGGGT
GTTTGCCTTGCTTCTGTATGGGAGTGACCACAAAGTGTCAGTCTTCAAGTTACACGAGAG
TCACTGTAGAAGCTGATATGACATCAAATTATGGTGGCTTAGCAATTGTTGATAATACAA
GGAATATGCGGACTGTTGAAGAGTTGTCCGCGCCAAATGGTCAAGAGGTCATTCGCAAGA
ATATGCAAAGTTTACCGGCCGGAAGTTATTACTGGCAACTACCAGATGAATTCCGTGGGG
ATAAGGTTGTCTCATACGGTGGTGATTTGACCTTCACAGTCTCTCATATGTCCTTCACGG
GTGACCAAACATCTGATAGTGATGTCATACTTATCGGCAACGATATAAAACTCCTCGCCA
CGATACCGGGAGATGTTCCACAACGTGAAAGACTGGAAAGGAAGATTACATTTAGAGAGC
AACATTGGAGGAGGGCAGATGGCGGTCCTGCTGGCCGGGAACATTTATTAATGGCATTGG
CAGACGTCCAAGATATCTTGATCCGTGCTACGTACTCTAGCGCTCCTAGTGAGAGCCGAA
TAAGCGCTATTTCCATGGAAACGGCATCTAGTGAACATCTTGATGGCGTACCAGCCATGG
AAGTTGAAGAATGTATTTGCCCTGATGGATATGAAGGACTTTCTTGTGAGGATTGCGCGC
CTGGATTCACACGGTCGGGTACCGGAATCAACTTGGGCTTATGTGCTCCATGTCAGTGCA
ACGGACATGCAGATGTTTGTGATTCAGAGACTGGAGTTTGCGTGGGCTGCCGGGACAATA
CTGCAGGTGACTTCTGTGATGAATGTATGGATGGTTATTACCCGTACATGAGAGATGGAA
CTATCGAATACTGTAGACCGTGTGCTTGCCCTGGGACAGGAGATAACAGTTTTTCGGACA
CATGTGAATTCAACAGTGATACTGGTTCCCTCGTGTGTACAGCGTGTGCGGAGGGTTACC
AAGGCGATCGTTGTGAAGACTGTGCGCCTGGTTACGACGGCAATCCACGTATAGCGGGTG
GAAGATGTGTACGACAATCGCAGCCAGCTCTACGACCTCCGGCTGTATCAGTGTCACCTC
CCAGTTTGGAAATTGAAGAAGGGGGCATTGGTAGACTAAGATGTGACGTCGATTCAGCTA
CACAATTCAACGTGATTTGGCGTAAAGACGGTCAACAAATTTTATCATCTCGTAATGTGT
ACGTGTCGAAACAGGGATTGGATTTCAGTGACTTCCGTGCGAGTGATGCTGGTACTTACG
AATGCGTTGCAAGGAATGGAGATGGAACGGACAGTGGAAGTGCAACTGTAGTTGTTAGAA
AAAATACACCAATGATTAAAGTTCGAGTTGAAGAACCGCGTACTCAAAGGGTTAAAGTTG
GATCTGATGTGACATTTGTCTGTACTGCAGAAAGCAAGATGTCAGCATACATTCTGTCTT
GGTCCAAGCGTGGCGTCCGCCTCCCACGGGACCGCTCAACGGATTTCAACGGAATATTAC
ATATTTCAAATGTACAAGAATCAGACTCTGGTACTTTAGTATGTACCGGCTCAAATATGT
ATGAAATAGACCAAGAAACAGCCACCCTTATTGTCTACAGAGGTTAGTAGCTGGTCTGTC
AACAATTGGTTGTAGTGTGACTAAAACACGGACAAATATCATCATGAATTTGTATTTTTA
TTTTGTGTGGATTTTTTGTTTTGTGTTTTAATA
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[288-327] 3.27E-11 - T[333-370] 4.71E-9 - T[377-415] 2.75E-9 |
| SMART |
EGF-like_dom (IPR000742) - T[292-328] 230.0 - T[1213-1253] 5.9 - T[1256-1295] 54.0 - T[1309-1346] 120.0 - T[1664-1707] 58.0 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[292-328] 13.338 - T[333-370] 13.225 - T[377-414] 11.95 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[292-329] 2.8E-10 - T[333-371] 9.5E-12 - T[377-415] 8.9E-10 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[293-327] 8.92962E-11 - T[378-411] 9.12946E-9 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[293-327] 7.1E-8 - T[333-369] 3.5E-8 - T[376-410] 9.4E-11 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[303-324] 2.3E-19 - T[345-366] 2.3E-19 - T[389-410] 2.3E-19 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[305-327] . |
| Gene3D |
Ig-like_fold (IPR013783) - T[412-516] 2.2E-22 - T[1711-1806] 1.6E-16 - T[1807-1895] 3.4E-17 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[413-507] 1.82E-21 - T[1716-1803] 1.23E-17 - T[1814-1896] 8.35E-15 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[414-504] 13.566 - T[1717-1801] 12.876 - T[1807-1894] 11.206 |
| SMART |
Ig_sub (IPR003599) - T[421-507] 5.4E-13 - T[1723-1803] 4.1E-10 - T[1816-1896] 2.3E-12 |
| SMART |
Ig_sub2 (IPR003598) - T[427-494] 2.8E-15 - T[1729-1792] 2.1E-6 - T[1822-1885] 4.1E-4 |
| ProSiteProfiles |
Laminin_IV (IPR000034) - T[696-893] 30.993 - T[996-1175] 35.667 - T[1392-1567] 38.367 |
| SMART |
Laminin_IV (IPR000034) - T[743-873] 4.1E-27 - T[1035-1162] 2.0E-37 - T[1429-1554] 6.7E-47 |
| Pfam |
Laminin_IV (IPR000034) - T[748-877] 3.1E-29 - T[1040-1174] 1.1E-32 - T[1434-1566] 1.3E-33 |
| Pfam |
Laminin_EGF (IPR002049) - T[893-915] 0.043 - T[941-969] 0.0052 - T[1175-1201] 0.0018 - T[1205-1252] 1.8E-9 - T[1266-1307] 0.045 - T[1316-1359] 1.6E-7 - T[1567-1589] 0.0029 - T[1601-1639] 3.3E-8 - T[1651-1706] 7.9E-6 |
| ProSiteProfiles |
Laminin_EGF (IPR002049) - T[894-971] 7.284 - T[1160-1204] 7.113 - T[1205-1254] 19.109 - T[1255-1312] 6.98 - T[1316-1366] 14.33 - T[1601-1650] 14.996 - T[1651-1708] 12.749 |
| SMART |
Laminin_EGF (IPR002049) - T[894-969] 1.3 - T[1175-1202] 3.1 - T[1205-1252] 2.9E-9 - T[1255-1310] 0.021 - T[1316-1364] 2.8E-8 - T[1556-1598] 2.5 - T[1601-1648] 7.3E-11 - T[1651-1706] 9.6E-4 |
| ProSitePatterns |
Laminin_EGF (IPR002049) - T[1334-1369] . - T[1617-1653] . - T[1676-1706] . |
| Pfam |
Ig_I-set (IPR013098) - T[1717-1802] 5.5E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LAMA1_HUMAN | 34.336 % | 289 | 2.04E-78 |
| LAMA2_HUMAN | 35.097 % | 289 | 2.43E-78 |
| PGBM_HUMAN | 42.207 % | 793 | 0 |