Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S112463.g12422.01.t

Possible name(s)

LOXL2; LOXL3; LOXL4

Gene model

Moocul.CG.ELv1_2.S112463.g12422

Location

S112463 [906 / 3,180]

Sequences

Amino acid sequence

Length: 442

>Moocul.CG.ELv1_2.S112463.g12422.01.p
MVHCAPRLKLTGTNSGRLEILRQRGWFALCDLGWDMRAADVACRELGFQSASELLLGLSS
DDYDGNLRTWVTSTKCTGREHSFKKCKHFNGYRARKGCSSNTQVGLVCVPFPATTKKVTA
AIIPTGSTWTNQTLPQLKIKIDIDGNLMTEENDNDWKMICGTNWKMTNAIVTCRHLHLGH
VESTHTIKMNNKRENQRLSIGNIKCNGNELNLSQCSRTAEVCTTSVYIKCTINAPDIVTD
VSALQRSLKLFIKEPRYLKCAKEEKCLSASAYSPFLHYPFRKLLAFSVNVFNQGTADLRP
PKKKQHWEWHSCHHHFHSIAEFASYELLTLDGSEVASGHKVSFCLEDSKCNRRSLKKYRC
NGRQTNEELQGISVGCSDNYGKDLDCQWIDVTDVRPGTYVLKILLNPIKLFSENNYDNNE
TRCTVILKERHAFIDGKCTNEF

Nucleotide sequence

Length: 1,329

>Moocul.CG.ELv1_2.S112463.g12422.01.t
ATGGTGCATTGTGCACCACGATTAAAACTGACAGGAACAAACAGTGGTAGGTTGGAGATA
CTCCGTCAAAGAGGATGGTTTGCATTATGCGACTTGGGCTGGGACATGCGTGCGGCAGAT
GTTGCTTGCAGGGAACTTGGATTTCAGTCTGCAAGTGAACTGCTGCTTGGGCTGTCATCT
GATGATTATGACGGAAACTTAAGGACTTGGGTGACAAGTACAAAGTGTACAGGACGCGAA
CACAGCTTTAAAAAATGCAAACATTTCAATGGATATCGTGCACGGAAAGGCTGCAGTAGC
AATACTCAAGTTGGGCTTGTATGTGTTCCATTTCCTGCCACCACTAAAAAAGTAACTGCT
GCGATTATTCCAACCGGTAGTACGTGGACAAATCAAACTTTGCCTCAGTTGAAAATCAAG
ATTGACATCGATGGAAATCTTATGACTGAAGAAAACGACAATGATTGGAAGATGATTTGT
GGAACCAACTGGAAGATGACAAATGCTATTGTGACATGCAGACACCTTCATCTGGGCCAT
GTAGAAAGTACACACACGATCAAAATGAACAATAAACGAGAGAATCAAAGACTGTCAATT
GGAAACATAAAATGTAATGGAAACGAACTTAATTTATCGCAATGTTCTCGTACGGCAGAA
GTTTGTACAACAAGTGTTTATATCAAATGTACCATCAATGCTCCTGATATTGTCACTGAC
GTGTCAGCGCTACAACGTTCCTTGAAGTTGTTCATAAAAGAACCTCGTTATCTGAAATGT
GCAAAGGAAGAAAAGTGTTTATCGGCATCTGCGTATTCCCCATTTCTTCACTACCCTTTC
AGAAAACTACTTGCGTTTTCCGTAAATGTTTTCAATCAAGGAACGGCAGATTTGCGACCG
CCAAAGAAAAAGCAGCATTGGGAATGGCATTCATGTCACCACCACTTCCACAGCATCGCC
GAATTTGCTTCATATGAACTTTTGACCTTGGATGGTTCTGAAGTAGCCTCAGGTCACAAG
GTCAGTTTCTGCTTGGAAGACAGCAAATGCAACCGGAGGTCATTGAAGAAGTACAGGTGC
AATGGAAGACAGACGAATGAAGAACTGCAGGGAATATCAGTTGGCTGTTCTGATAATTAT
GGGAAAGACCTGGATTGTCAATGGATCGACGTTACCGATGTCAGACCGGGAACATATGTT
TTGAAAATTCTGTTAAATCCCATCAAACTCTTTTCCGAAAACAATTACGACAACAATGAA
ACGAGATGCACTGTGATACTCAAAGAAAGACACGCATTTATCGATGGAAAATGTACGAAT
GAATTTTAA

InterProScan

ProSiteProfiles	SRCR (IPR001190) - T[1-109] 19.933 - T[144-231] 13.38
SMART	SRCR-like_dom (IPR017448) - T[6-109] 5.5E-20 - T[147-231] 0.0011
Gene3D	SRCR-like_dom_sf (IPR036772) - T[6-113] 3.8E-20 - T[142-231] 2.3E-11
SUPERFAMILY	SRCR-like_dom_sf (IPR036772) - T[12-113] 2.35E-20 - T[153-228] 8.11E-11
Pfam	SRCR (IPR001190) - T[13-108] 1.9E-18 - T[153-230] 3.5E-11
Pfam	Lysyl_oxidase (IPR001695) - T[235-434] 9.6E-70
PRINTS	Lysyl_oxidase (IPR001695) - T[244-268] 1.9E-26 - T[289-310] 1.9E-26 - T[311-331] 1.9E-26 - T[386-405] 1.9E-26 - T[406-423] 1.9E-26

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
LOXL2_HUMAN	35.035 %	263	2.54E-80
LOXL3_HUMAN	35.104 %	263	2.08E-80
LOXL4_HUMAN	34.884 %	265	2.45E-81