- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C3.533.v2....' >
- Transcript 'KH2012:KH.C14.324.v1...' >
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- Transcript 'Moocul.CG.ELv1_2.S11...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S111341.g11986.01.t
Possible name(s)
LRP1B; LRP2; SORL1
Gene model
Location
S111341 [40,082 / 42,700]
Amino acid sequence
Length: 840
>Moocul.CG.ELv1_2.S111341.g11986.01.p
MTLNSSRLLVLIVFIFTRNTETREERRNNISCGPHEFVCDSGKCIQQNHVCDNIKDCTNG
EDEDVNVCRNITSSCWSWQQACGEDGRCQPHSFQCDNGKCIGIEDGCNRIDDCGDGSDER
RGLIGFKCVFINGTDLCNLPARLINDGIQHCHVPLDEFKENEKFVFECFDKTQNISIEQQ
CDGVIDCPDLSDECPCEDEARDNDPSHICSRYCTPFNQNMSRQCRLKTIACDDGAKELNT
NKICDGVRNCADGLDERFCVYSNNHTILPQEISCIGNIYGTENITAKLCDDIPECFDLSD
ECDCSGNLAPFCKLRSKLKSNGLYHYLCKTDIGNEYSFTAQDICNGNWSPCDPRFHEEEE
GCKDRFYCENNEEKQKSGSSVTNRLKCDGFPQCKTGSDEDDCNNRYQCEEGPPFSVPLNY
VSDGIGDCTDASDECPYDLDDKFVSSRKEMIDFLFIRVWVWLIGFSVIFANAYVVVITCK
QLRETWSTSTNVGKGNLILIANLATADFIMGIYLIAHDLSWRSGLTCSLLGSLSVISSQV
SIFMLMTLATVRLITLLNPIRSRNFRLRWILLCVFLEWALGFVVAFLPMSSLLVDTFTIS
AWIPSKFNKNANIQLNKITALLQKLESYTPNSTFDEAINSWEEVQHFLGSVKQVKTKVRG
RFAYYSRHAICVPDFYLRTTDEGWQLPATIIIFNFLSFIYLPVIYFIIYRKTSKITITST
AVQRNSQMQRKMLKLVVSDFLCWMPICLLSLLNNFHIINSVSLSVLYAVTAIILLPINSF
LNPLLYADTFEKLWAKFMHLATRVSNGSPSMKVHTRPTCDHFHDRDTLETYIRGGGGSQN
Nucleotide sequence
Length: 2,523
>Moocul.CG.ELv1_2.S111341.g11986.01.t
ATGACACTGAATAGCAGCAGACTGTTGGTTTTAATAGTGTTCATATTTACACGAAATACA
GAAACAAGAGAAGAACGAAGGAATAATATTTCATGCGGTCCGCACGAGTTCGTTTGCGAT
TCCGGCAAATGCATCCAACAGAATCACGTGTGTGATAACATCAAAGATTGTACAAATGGC
GAAGATGAAGACGTAAACGTATGCAGGAACATCACTTCATCTTGTTGGAGTTGGCAGCAA
GCGTGTGGAGAAGACGGACGATGCCAACCACACAGTTTTCAGTGCGATAATGGAAAGTGC
ATTGGAATTGAAGATGGATGTAACCGGATTGATGATTGTGGGGATGGTTCGGATGAAAGG
AGGGGGTTGATCGGCTTTAAATGTGTATTTATTAACGGAACTGATCTTTGTAATCTTCCA
GCGAGGTTAATTAATGATGGAATCCAACATTGCCATGTGCCTCTCGATGAATTTAAGGAA
AACGAAAAATTTGTTTTCGAATGTTTCGATAAAACCCAAAACATTTCCATCGAACAACAA
TGTGATGGCGTCATTGATTGTCCAGATCTTTCCGATGAATGTCCGTGTGAAGATGAAGCA
CGAGATAATGACCCTTCCCATATCTGTTCAAGATATTGCACGCCGTTTAATCAAAACATG
AGCAGGCAATGCAGGCTAAAGACAATAGCTTGTGATGATGGCGCGAAAGAGCTGAACACT
AATAAAATTTGTGACGGTGTTCGGAATTGTGCTGATGGCTTGGATGAAAGATTCTGTGTT
TATTCAAACAACCATACAATATTACCACAAGAAATATCATGCATTGGAAACATTTACGGA
ACCGAAAATATCACAGCTAAACTTTGCGACGACATTCCAGAGTGTTTCGATCTATCTGAC
GAATGTGATTGCTCTGGTAACTTAGCGCCTTTCTGTAAACTTCGATCAAAGTTAAAATCA
AATGGACTTTACCATTACTTGTGTAAAACCGATATTGGAAATGAGTATAGCTTTACCGCT
CAGGATATATGCAACGGAAACTGGTCTCCTTGTGATCCACGATTTCACGAAGAGGAAGAA
GGGTGTAAAGATCGATTTTATTGCGAAAATAATGAAGAAAAACAAAAGAGTGGGTCGTCT
GTGACAAACAGATTGAAATGTGATGGATTTCCACAGTGCAAAACCGGATCGGATGAAGAT
GATTGTAATAACAGGTATCAGTGTGAAGAAGGTCCTCCATTTTCCGTCCCTTTGAATTAC
GTCTCGGACGGAATTGGCGATTGCACTGACGCAAGTGACGAATGCCCTTATGATCTAGAC
GATAAATTTGTATCATCTCGAAAAGAAATGATTGATTTCCTATTTATCAGAGTTTGGGTG
TGGCTTATAGGGTTCTCAGTTATTTTTGCAAATGCCTATGTTGTAGTTATCACGTGCAAA
CAACTGCGAGAGACTTGGTCAACGTCTACCAACGTTGGAAAGGGAAATTTGATTTTGATT
GCGAACTTGGCAACGGCCGACTTCATAATGGGAATATACTTAATTGCACACGATCTAAGT
TGGCGATCAGGTTTGACTTGCTCTCTTCTGGGCAGTTTATCGGTCATCTCCAGCCAAGTG
TCCATCTTCATGTTAATGACTCTTGCAACGGTACGGTTGATTACTCTCCTGAATCCAATC
AGATCTCGCAACTTTCGACTTCGTTGGATATTGTTGTGTGTTTTTCTTGAATGGGCTCTT
GGCTTCGTCGTAGCGTTTCTACCGATGTCGTCGTTGCTGGTTGATACCTTCACCATAAGT
GCTTGGATCCCGTCCAAGTTCAATAAAAATGCGAATATACAACTAAACAAAATTACAGCC
TTGTTACAAAAGCTTGAAAGTTACACACCAAACAGCACTTTTGACGAAGCTATCAATAGT
TGGGAAGAAGTTCAACATTTCTTGGGAAGCGTCAAGCAAGTTAAAACAAAAGTCAGGGGG
AGATTTGCTTATTACTCGAGACATGCGATATGCGTTCCAGACTTCTACCTGAGAACTACG
GATGAAGGTTGGCAGCTTCCGGCTACGATTATCATCTTCAACTTCCTTTCCTTTATCTAT
CTTCCAGTGATATATTTCATAATATACAGGAAAACCTCAAAGATTACAATCACCAGCACT
GCAGTTCAAAGAAACAGTCAAATGCAAAGGAAGATGTTAAAGCTTGTAGTGTCTGATTTT
CTGTGTTGGATGCCGATATGTTTGTTGTCTCTGTTGAATAACTTTCATATCATCAATTCT
GTGTCGTTGTCTGTATTGTATGCGGTAACTGCTATCATTCTACTGCCTATAAACAGTTTT
CTCAATCCATTGCTTTATGCCGACACCTTCGAAAAACTTTGGGCAAAATTTATGCATTTA
GCAACACGTGTATCTAACGGTTCGCCATCTATGAAGGTACACACTCGTCCCACATGTGAT
CATTTCCATGATCGTGATACTTTGGAAACGTACATAAGAGGAGGAGGTGGATCCCAAAAC
TAA
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[29-64] 1.06E-8 - T[87-121] 2.21E-8 - T[165-196] 8.9E-5 - T[221-260] 3.27E-5 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[31-66] 1.0E-8 - T[87-120] 3.1E-8 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[31-70] 1.6E-9 - T[87-124] 5.3E-7 - T[157-198] 0.028 - T[223-261] 5.8E-4 - T[361-404] 0.038 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[31-69] 12.113 - T[87-129] 11.625 - T[223-260] 8.725 - T[361-403] 9.55 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[32-64] 2.18841E-8 - T[88-120] 6.75815E-9 - T[166-193] 0.00579059 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[42-63] 1.0E-20 - T[98-119] 1.0E-20 - T[235-256] 1.0E-20 - T[280-301] 1.0E-20 - T[378-399] 1.0E-20 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[44-68] . |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[179-256] 2.4E-67 - T[288-798] 2.4E-67 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[470-786] 22.699 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[496-590] 4.6E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP1B_HUMAN | 28.165 % | 94.7 | 1.23E-19 |
| LRP2_HUMAN | 28.372 % | 98.2 | 1.04E-20 |
| SORL_HUMAN | 27.376 % | 92 | 7.53E-19 |