- Transcript 'Moocci.CG.ELv1_2.S35...' >
- Transcript 'Moocul.CG.ELv1_2.S11...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S111028.g11880.01.t
Possible name(s)
LRP2; LRP4; SORL1
Gene model
Location
S111028 [92,020 / 95,870]
Amino acid sequence
Length: 631
>Moocul.CG.ELv1_2.S111028.g11880.01.p
MRTIIATCVFIALAAFKGTKGTLAGFTCGDGASILSSQFCDGVSDCLDGSDEVSVSNSTS
TNYTSCNNINSIFNNSCALNRDFVCKGIIKCSGTTECDARCPTHYKCQTSKECHLRSTVC
DTSKCTGCTEEDHGWTNGVGFKCKRKGETCILPQQLLWDDISDCDGNIDRCYDVMNTAKV
KDNWDLRVDSEAVFNHTRCFKCYDNTTIVPRDSLCDGIVDCPDLSDECICQRNVSEVCNR
VQLWPKKTESCTPGEFRCMDGRCIQRSSVCDGLSDCATAEDERSCGGTKPCVKATTTGES
CRCYYHQKSCHRQMGHACDSVGQCNPTDKPPFKSMWRGGYPEDECGKNCSVPNNFTCGAN
KTISDGSLPPQHQCSRVTLVESQYCDGLIDCPDGSDERISMCANRRFNCSAGRHVSIPIE
AKCDGVKDCDSGEDETKDLCENTRYFSKCDGVKDCDSGEDETRDLCENTRYFCKALGGKM
VNINKAHICDLYTNCDNGSDEHNCTDDRFYCESGQPAFVTLRKIKNGIPDCSDWSDECPS
SGQYQTDNVFSSKRELVGSLFLRIWLWIMAIATLIGNSIVLVYEVRTLSTGGLSSSLFAN
HVLVLNLVIADLLMGLYLIILAGKIVETSAS
Nucleotide sequence
Length: 1,896
>Moocul.CG.ELv1_2.S111028.g11880.01.t
ATGAGAACAATTATTGCTACGTGTGTATTTATTGCACTTGCAGCATTTAAAGGCACCAAA
GGAACTTTGGCAGGTTTTACTTGTGGTGATGGAGCGAGTATTCTCAGCAGTCAATTCTGT
GATGGGGTTTCTGACTGCTTGGATGGTAGCGATGAAGTATCTGTCAGCAACTCGACATCA
ACAAATTACACAAGCTGTAATAACATAAACAGTATTTTCAACAACTCGTGTGCACTCAAT
AGAGATTTTGTTTGCAAGGGTATTATCAAATGTAGCGGAACCACTGAATGCGACGCAAGA
TGTCCAACTCATTACAAGTGCCAGACGTCCAAAGAATGCCATTTGCGTTCAACTGTTTGT
GATACTTCCAAGTGCACGGGATGCACAGAGGAAGACCACGGATGGACAAATGGCGTCGGT
TTTAAATGTAAAAGGAAGGGAGAAACGTGTATTCTTCCACAACAATTACTTTGGGACGAC
ATTTCCGATTGTGACGGGAACATAGACCGTTGTTATGACGTCATGAACACCGCGAAAGTA
AAAGACAATTGGGATTTGAGGGTTGACAGTGAAGCCGTTTTCAACCATACACGATGTTTC
AAATGTTACGACAACACCACGATCGTACCCCGAGATTCATTGTGTGATGGAATAGTGGAC
TGCCCTGACCTTTCAGACGAATGCATTTGTCAAAGAAACGTGTCAGAAGTTTGCAATCGT
GTTCAGCTGTGGCCTAAAAAGACGGAATCTTGTACTCCTGGAGAGTTCCGATGTATGGAC
GGAAGATGCATTCAAAGATCTTCAGTATGCGATGGATTGTCTGATTGCGCAACAGCAGAA
GATGAAAGGTCATGTGGTGGAACGAAACCTTGTGTGAAGGCAACAACCACAGGAGAATCA
TGCAGGTGTTATTATCATCAAAAATCATGTCATCGCCAAATGGGGCATGCATGTGATAGT
GTGGGACAATGTAACCCTACAGATAAACCACCATTTAAATCGATGTGGAGGGGAGGATAC
CCTGAAGATGAATGCGGAAAAAATTGCTCAGTGCCAAACAATTTTACTTGTGGGGCAAAT
AAAACAATTAGTGATGGTTCGCTTCCACCGCAACATCAATGTTCACGTGTGACGTTGGTG
GAAAGTCAATATTGTGACGGGCTGATCGACTGTCCCGATGGTTCAGATGAAAGAATAAGC
ATGTGTGCGAATAGACGGTTCAATTGTTCTGCTGGAAGGCACGTGAGTATACCGATTGAA
GCCAAGTGCGATGGAGTCAAAGACTGCGACAGTGGAGAAGACGAAACTAAGGACTTGTGC
GAAAACACAAGATATTTCTCCAAGTGCGATGGAGTCAAAGACTGCGACAGTGGAGAAGAC
GAAACTAGGGACTTGTGCGAAAACACAAGATATTTCTGTAAAGCACTGGGCGGGAAAATG
GTAAATATTAACAAAGCTCACATCTGTGATTTATACACAAATTGTGATAACGGATCAGAT
GAGCATAACTGCACAGATGACAGATTTTATTGTGAAAGTGGACAACCTGCGTTTGTTACG
TTACGAAAGATTAAAAATGGTATTCCGGATTGCTCAGATTGGAGTGACGAATGTCCATCT
AGCGGACAGTATCAAACGGACAATGTGTTTTCATCTAAACGTGAACTTGTAGGAAGCCTG
TTTCTACGAATTTGGTTATGGATAATGGCAATAGCAACCTTAATAGGAAATTCGATAGTG
TTGGTTTACGAAGTACGTACTTTATCAACTGGAGGATTGTCCTCGTCACTCTTTGCCAAT
CATGTCCTCGTCCTCAATCTTGTAATCGCTGATCTTTTAATGGGACTTTATCTTATTATT
CTTGCTGGAAAAATTGTCGAAACATCGGCAAGTTAA
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[7-67] 8.575 - T[250-286] 13.1 - T[348-403] 10.45 - T[401-441] 9.7 - T[465-505] 8.7 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[21-57] 1.3E-4 - T[195-232] 0.15 - T[250-287] 2.9E-10 - T[348-399] 0.29 - T[401-442] 8.1E-4 - T[465-506] 0.042 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[25-54] 3.53E-8 - T[199-230] 4.32E-5 - T[248-285] 4.06E-10 - T[400-436] 1.09E-6 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[25-53] 1.9E-6 - T[250-285] 8.5E-10 - T[401-437] 2.9E-5 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[26-52] 2.98696E-4 - T[251-285] 3.37157E-7 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[206-227] 7.5E-21 - T[261-282] 7.5E-21 - T[414-435] 7.5E-21 - T[440-461] 7.5E-21 - T[480-501] 7.5E-21 - T[516-537] 7.5E-21 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[263-285] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP2_HUMAN | 27.372 % | 84.7 | 9.56E-17 |
| LRP4_HUMAN | 29.863 % | 85.9 | 3.72E-17 |
| SORL_HUMAN | 28.389 % | 84 | 1.55E-16 |