- EST 'BW407360' >
- Transcript 'Cisavi.CG.ENS81.R131...' >
- Transcript 'Moocul.CG.ELv1_2.S10...'
Transcript Model
Transcript Id
Moocul.CG.ELv1_2.S104476.g09852.01.t
Possible name(s)
LDLR; LRP1B; SORL1
Gene model
Location
S104476 [838 / 10,816]
Amino acid sequence
Length: 751
>Moocul.CG.ELv1_2.S104476.g09852.01.p
FCKERSLIAVEFCCWMPICVMAFINLSDIEVPHAAYAFSAIILLPINMVLILQVTGTKAT
GDNQDKYLRKFFLCSNELQILDEYFCNDVSDCSDESDEQKANNVTDVYNHVNGTVKCNNV
LNNSNKTCILSKRQLCDGSIKCKGLSPCDVYCDNYYRCQNTKECKKRSTVCDEDTCNGCT
EDHELKTGVGFKCKRFGKICVLPQQLLFDHIADCDGGLDKCYKNTTAENDYRYDVRPNDL
YEFDEKLCFECFDGSMIIPRSLVCDGNVDCSDLSDECLCQKKTTPSKVCSMLYMEPSSFK
ENSTALKLKSDSTAHCEYGNIQCNDGKCIRRGEVCNGFADCGMFYEDEGDDFCGISLKCN
ENKEILKSDDKCICKGTDGCQTVVASVCDGEIECFESADECFPFCGYWANRTNVSMLSTS
VFSCPPIFVGGDTFYQCTTSYSLRVENSKLSSSSIGGQGYVYESKVLFAKCDGNLLCDVG
WEDELSCVGRTSCENATKGRSYSLRVENSKLSSSSIGGQGYVYESKVLFAKCDGNLLCDV
GWEDELSCVGRTSCENATKGRISIDTDLRCDYYIACDKAEDELNCNDSRFYCEDGKMPIF
ERQKQISIDSGLRCDHFIACDNAEDELNCHDKRFYCEDEKMPIFVRETQIFDGIQDCEDW
SDECPSNSSLRKENIFSSRYELIANPVLRAFIWIMGFAALIGNMGKYCANELDWRSSDLC
TALGIICSISAETSVFSLLALTAFRLYSVLR
Nucleotide sequence
Length: 2,253
>Moocul.CG.ELv1_2.S104476.g09852.01.t
TTCTGCAAAGAAAGGTCGCTAATTGCGGTTGAATTTTGCTGTTGGATGCCAATTTGTGTG
ATGGCTTTCATCAATCTATCCGACATCGAAGTTCCACATGCTGCTTATGCCTTCTCTGCA
ATCATATTACTGCCAATCAACATGGTGCTGATACTTCAAGTGACTGGAACGAAGGCTACT
GGTGACAACCAGGATAAATATCTACGCAAGTTTTTCTTATGTTCCAACGAACTCCAAATT
CTCGACGAATATTTTTGTAATGACGTCAGTGACTGTTCTGACGAAAGTGACGAACAAAAA
GCGAATAATGTTACTGATGTGTACAATCATGTTAACGGCACTGTAAAGTGTAATAATGTG
CTAAACAATTCCAACAAAACCTGCATTTTGTCAAAACGACAACTTTGTGATGGATCGATC
AAGTGTAAAGGATTGTCTCCCTGTGATGTATATTGCGACAATTACTACAGATGTCAGAAT
ACAAAGGAGTGCAAGAAACGAAGTACAGTTTGCGACGAGGACACATGCAATGGATGTACA
GAAGATCATGAATTGAAAACAGGAGTGGGCTTCAAATGCAAACGGTTTGGAAAGATCTGT
GTCCTTCCACAGCAACTACTATTTGACCACATTGCTGATTGTGATGGCGGCCTGGACAAA
TGTTATAAAAACACAACGGCAGAGAATGATTACAGATACGACGTTCGTCCGAATGACCTC
TACGAGTTTGACGAAAAATTGTGCTTCGAATGTTTTGACGGAAGTATGATCATTCCACGA
TCACTTGTTTGTGATGGAAACGTCGATTGTTCGGATTTATCGGATGAATGTTTGTGCCAG
AAGAAGACTACACCATCCAAAGTTTGTTCCATGCTTTACATGGAACCTTCAAGCTTCAAA
GAAAATTCAACAGCTTTAAAACTAAAAAGCGATTCAACAGCTCATTGCGAGTACGGAAAC
ATACAATGTAATGATGGAAAGTGTATCAGACGTGGTGAAGTCTGCAATGGTTTTGCGGAT
TGCGGTATGTTTTACGAAGATGAAGGGGACGATTTCTGTGGTATTAGCCTCAAATGCAAC
GAAAATAAAGAGATCCTGAAGTCTGACGACAAATGCATATGTAAAGGAACCGATGGATGT
CAAACAGTTGTCGCCAGCGTTTGTGATGGTGAAATTGAGTGTTTCGAGTCAGCTGACGAA
TGCTTCCCATTTTGTGGATATTGGGCCAATAGGACCAATGTAAGCATGTTGTCGACATCT
GTGTTTTCGTGTCCGCCAATTTTCGTTGGAGGAGATACCTTCTACCAGTGTACAACGTCA
TATTCACTACGTGTTGAAAATTCAAAACTTAGTAGTAGTTCGATTGGTGGCCAAGGTTAC
GTATACGAGAGCAAAGTGCTATTTGCGAAATGTGATGGGAACTTGTTATGCGATGTTGGA
TGGGAAGATGAACTAAGCTGCGTTGGTCGAACTTCCTGTGAAAATGCGACCAAAGGAAGA
TCATATTCACTACGTGTTGAAAATTCAAAACTTAGTAGTAGTTCGATTGGTGGCCAGGGT
TACGTATACGAGAGCAAAGTGTTATTTGCGAAATGCGATGGTAACTTGTTATGCGATGTT
GGATGGGAAGATGAACTAAGCTGTGTTGGTCGAACTTCTTGTGAAAATGCGACCAAAGGA
AGAATAAGCATCGATACGGACCTTCGATGTGATTATTACATCGCCTGCGACAAGGCTGAG
GATGAATTGAACTGCAACGATAGTAGATTCTACTGTGAAGACGGAAAAATGCCAATATTC
GAAAGGCAAAAGCAGATAAGTATCGATTCGGGCCTCCGATGTGATCATTTCATCGCCTGC
GACAATGCTGAGGACGAATTGAACTGCCACGATAAGAGATTCTACTGTGAAGACGAAAAG
ATGCCAATATTCGTAAGGGAAACGCAGATATTTGACGGGATTCAAGATTGTGAGGATTGG
AGTGATGAATGTCCTTCCAACTCGTCCCTTAGAAAGGAAAATATATTCTCGTCACGCTAC
GAACTCATTGCTAATCCTGTGTTACGAGCATTTATATGGATTATGGGGTTTGCTGCGTTG
ATTGGAAATATGGGGAAATATTGTGCTAATGAATTAGACTGGAGATCAAGTGATTTATGT
ACTGCTTTGGGAATAATATGTTCCATCTCAGCGGAAACATCTGTTTTCTCGTTGTTAGCA
CTGACGGCATTTCGTCTTTATTCTGTTCTTCGA
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[7-50] 1.9E-30 - T[86-167] 1.9E-30 - T[263-704] 1.9E-30 - T[705-749] 1.9E-30 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[65-106] 0.24 - T[244-281] 0.019 - T[315-355] 0.0061 - T[584-631] 1.7 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[70-101] 1.7E-5 - T[248-279] 3.14E-5 - T[314-345] 8.38E-5 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[249-280] 8.75 - T[315-354] 8.675 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[249-279] 0.00298152 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[255-276] 3.2E-11 - T[326-347] 3.2E-11 - T[561-582] 3.2E-11 - T[605-626] 3.2E-11 - T[642-663] 3.2E-11 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[328-353] . |
| Protein Name | Identity | Bit Score | e-value |
|---|