Aniseed - Transcript Card

Transcript Model

Transcript Id

Moocul.CG.ELv1_2.S104143.g09776.01.t

Possible name(s)

LSM10; LSM2; SNRPD1

Gene model

Moocul.CG.ELv1_2.S104143.g09776

Location

S104143 [20,602 / 22,745]

Sequences

Amino acid sequence

Length: 127

>Moocul.CG.ELv1_2.S104143.g09776.01.p
MKLARFLMKLSHETVTIELKNGTQVHGTIAGVDICMNTHLKSVKMTVKNREPVSLETLSI
RGNNIRYYILPDSLPLDTLLVDEGPQKTRQQRGFERGGRGGRGRGGGRGRGRGGGRGRGR
GGPPRRF

Nucleotide sequence

Length: 725

>Moocul.CG.ELv1_2.S104143.g09776.01.t
GCGAAATTTAAAGAAATATTAACCCTCTAGAATAAGCGGCTAGAGTAACTCTGGTCATTT
TCAGCGTGATTTTGTCTGCCTGTGCTTGTGTGCTAGCACAGGCAGACTGAAACGTGTGCT
GAAACGTAATTTTGCAGAGAGGATTTTGCCTCTAAATTTTAAACAAAATCAATATGAAGT
TGGCACGCTTTTTGATGAAGCTGAGTCACGAAACTGTCACCATTGAATTGAAGAATGGAA
CCCAAGTTCATGGAACCATCGCGGGTGTGGATATTTGCATGAATACGCACTTGAAGTCAG
TAAAGATGACTGTGAAGAACCGAGAACCTGTTTCATTGGAAACCCTCAGCATCCGTGGAA
ATAATATCCGGTATTACATCTTGCCGGACAGTTTGCCATTGGATACTTTGTTGGTCGACG
AAGGACCTCAGAAGACCAGACAGCAGCGTGGATTTGAACGTGGAGGAAGAGGAGGACGTG
GCCGAGGAGGAGGTCGAGGACGTGGCCGAGGAGGAGGAAGAGGGCGGGGCAGAGGAGGAC
CTCCTCGCCGATTTTAACCAATCAAATTCTTTGTTGCAATCGCTTGTTTTTTATCCTAAC
AACTTAGCGGACAAAGGTCTTTATCTTTTTATCCCTAGGTACCTGGTATTGCTGCATTTC
GATTGCCATAAAATAATGTGATTATGATTGAAACTCGTCCTAATGAATAAAAATCATTGT
TTTTA

InterProScan

PANTHER	LSm4/Sm_D1/D3 (IPR027141) - T[1-110] 1.1E-48
CDD	Sm_D1 (IPR034102) - T[2-86] 1.05322E-59
SUPERFAMILY	LSM_dom_sf (IPR010920) - T[5-121] 4.09E-27
Pfam	LSM_dom_euk/arc (IPR001163) - T[5-69] 6.1E-19
SMART	LSM_dom_euk/arc (IPR001163) - T[5-70] 1.2E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SMD1_HUMAN	82.609 %	161	1.37E-52