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TRANSCRIPT CARD

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  1. Clone 'cign011c07' > 
  2. Clone 'cien202420' > 
  3. Transcript 'Cisavi.CG.ENS81.R48....' > 
  4. Transcript 'Harore.CG.MTP2014.S2...' > 
  5. Transcript 'Mooccu.CG.ELv1_2.S70...'

Transcript Model

Transcript Id

Mooccu.CG.ELv1_2.S702957.g44942.01.t

Possible name(s)

SOX11; SOX12; SOX4

Gene model

Mooccu.CG.ELv1_2.S702957.g44942

Location

S702957 [1,178 / 15,414]

Sequences

Amino acid sequence

Length: 541

>Mooccu.CG.ELv1_2.S702957.g44942.01.p
MLPSTTHAVYANDMNKERNSNMERSPDSPDSAVSGMGYDTDCDASMDEFRRSLSQMCDAT
ARQTQSPSPTLSCIVGHDDLDSEHNDDGKLSPIAYDKSRFASVFRKTKHEAVNILEELEN
LPKTSVKLPPPSISSQKKERARPNHIKRPMNAFMVWSQIQRRKIVEQSPKIHNAEISRNL
GKRWRDLDIVEKEPFIIEAERLRLQHMRDHPEYKYRPKKRGKSASNKKRRRTESESSEHS
TTSTSDEYEVMNRISPLEHPQSKGMQKSTSDLPQPDITSNQSDMTQMTNKTHAIQQTNKR
AKRTKAIKTKPKEQITDNKQTINSTSLTNNSPTLKEALLQKPAPAQSQPSKLKSKFILPS
TLARSPGGSTKPRDVVKARAGPINNSLVLPQQQLTKFAPTKTVTGGIQNTGSFIPLTKQT
IIACSQATDANRMVQRQPSAPMAIPSHPRNLQNSSFSNYRSCSVSSVSSECSEIESFSDH
IGSYSSSIKEDVGLDLNQITLGSRVGLMEPFEPKSQFDLDDYNTQEIYNLIEDNNMQWYL
*

Nucleotide sequence

Length: 2,719

>Mooccu.CG.ELv1_2.S702957.g44942.01.t
ATTTTCTAAACCGTCGTTCTGTTTTTGTTGGCAGAAATATAACTTCCGTTTTGCCTTACT
TAAACATTTCGTATAATTAAATGGGAGAGTGGAATTAAGAACAAGAGAAATATGTTACCC
AGCACTACGCATGCTGTGTATGCTAATGACATGAATAAAGAACGAAATTCGAATATGGAG
CGGTCGCCAGATTCACCGGACTCTGCTGTTTCGGGGATGGGCTATGATACTGACTGTGAT
GCGTCTATGGATGAGTTTAGAAGGTCGTTGTCGCAAATGTGCGATGCTACAGCTCGTCAA
ACACAATCACCTTCACCTACTTTAAGTTGTATTGTCGGCCATGACGATCTTGATAGCGAG
CATAATGACGATGGTAAATTGTCACCAATCGCTTACGATAAGTCACGATTTGCAAGCGTG
TTTCGGAAAACCAAACACGAGGCTGTGAATATCCTTGAAGAGTTGGAAAACCTGCCCAAA
ACATCAGTGAAACTTCCTCCTCCGTCAATAAGCAGTCAAAAGAAAGAACGTGCAAGACCA
AATCACATTAAACGGCCGATGAATGCTTTCATGGTTTGGTCGCAAATACAGAGAAGAAAA
ATTGTGGAGCAAAGTCCTAAGATTCACAACGCTGAAATCAGTCGGAATCTTGGCAAGCGA
TGGAGGGATTTGGACATTGTAGAAAAGGAGCCTTTCATCATTGAAGCGGAACGACTTCGT
CTTCAACACATGCGCGATCATCCCGAATACAAATATCGACCAAAGAAGAGAGGAAAGTCT
GCAAGCAACAAGAAACGTCGTCGAACAGAATCTGAATCCAGTGAGCACAGCACGACAAGT
ACAAGTGATGAGTATGAAGTAATGAACAGGATATCCCCTCTTGAACATCCACAATCAAAA
GGGATGCAAAAATCCACGTCAGATCTTCCTCAACCGGACATCACCAGCAACCAATCGGAC
ATGACGCAAATGACCAACAAAACTCATGCAATACAACAGACTAATAAACGGGCCAAACGA
ACCAAAGCGATCAAAACTAAACCAAAAGAACAAATAACAGACAACAAACAAACAATAAAC
AGCACATCCTTAACGAACAATTCACCAACTTTAAAGGAAGCTCTCTTGCAAAAACCAGCT
CCAGCACAATCGCAACCGAGCAAACTTAAAAGTAAGTTTATCCTCCCTTCGACGCTTGCA
AGATCGCCTGGTGGCTCCACAAAACCTCGTGATGTTGTCAAAGCACGCGCTGGTCCAATC
AACAACTCATTAGTCCTTCCTCAGCAACAATTGACGAAATTTGCGCCCACAAAAACAGTC
ACAGGCGGCATTCAGAACACGGGATCATTCATACCTCTCACAAAACAGACAATAATCGCA
TGCTCGCAAGCAACTGACGCCAATCGCATGGTTCAAAGGCAACCGTCAGCACCAATGGCG
ATTCCATCTCATCCAAGGAACCTACAAAACAGCAGTTTTTCAAATTACCGTTCGTGTTCG
GTATCGTCCGTATCATCTGAATGTAGTGAAATCGAATCGTTTAGCGACCACATTGGATCA
TATTCATCTTCAATTAAGGAAGATGTCGGGTTGGATCTGAACCAGATCACGCTCGGATCA
CGCGTTGGACTAATGGAACCTTTCGAACCGAAATCTCAATTTGATCTGGATGATTATAAC
ACGCAAGAAATATACAATTTAATCGAAGACAATAATATGCAATGGTACTTATAATTTCCT
CGCCTTTCACGTGTAATGTGACTTGAGATCACCACCTAGCGGGTGCTATTTTGTTATATT
ATTTATTCAAATTTAATGTTCCGATATTCAGTCTTCTTCTTCTTCCGATAGACACTTGCC
TTTCAAATGTTTCCACCATATAAAAACTCTTTGCGTCTTGCAACAAAAAATTCATTTTGT
TTCTCTCATTTTTCTTCACTTTTCTCTCTCGAAATCATACAACAAAACTTAATGTTTTTA
CACATTTTAATAATGTTAATGCGAGCTGCCAGATCGTGATATAAGTCCGGATTGCTGTAC
TTTATACCATAATAATGTTCTTTATAAAAATGTTAAAAAATATTACAGTAGACTAGAATT
ATATATCATTATATATAGATGTTTGTGACCATTGTTTGGTAAAAAAAAAAAAACTTAATA
ACACTTTTAAATGACGAAAAAAAATATTTAACTTGCAAATTAAACTATCAACCTACCGAA
AATTCAATCCAATATAAAACACAGGCTTGTTGACCATGTTAACCTCCACTATTTTGTGAA
TTATATTTTTTGCCAAAAATTTCGTTAATTTTTTGTGCTAATTTACTACATCGATTTAAA
AAAAATACCTCCAAAAATACGTTTTTACACCCTCAGGGTTTCAATGGCTTAAAAAGTACA
CATATCAACCCAGAATAAGAAAAATGAAATTGTTCAAATTTCTTGCTAAAAATCTCTCCG
CTGGCTGGAGATAAAGAGCTCATTTCAATACTGTTTCAATTAGGATGTTCCACAAGCCAT
TTGGTTTAAAACTGTGCATTTTGAAATGGTCTATTATTCCAATTTGCTGTAGCTCTCTTT
TCGTGCTTGTTTTTTTATATTGTACAGCGGAGATGCAGGTCCCGTCTGCCTCATCTCTTC
TTGCGAATGTTGTTGGTTATTTTTCATGAAAGTTTTTGTACAAAATTTGTAAAATAAAAT
GAAAATCATGAACAAAAAA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[166-252] 1.44E-25
Gene3D
HMG_box_dom_sf (IPR036910) - T[180-262] 3.2E-26
SMART
HMG_box_dom (IPR009071) - T[182-252] 8.2E-24
Pfam
HMG_box_dom (IPR009071) - T[183-251] 1.5E-23
ProSiteProfiles
HMG_box_dom (IPR009071) - T[183-251] 21.05

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX11_HUMAN 72.152 % 130 8.7E-33
SOX4_HUMAN 71.605 % 131 5.78E-33
SOX12_HUMAN 65.476 % 123 2.44E-31