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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S5...' > 
  2. Clone 'AHC0AAA239YP10' > 
  3. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  4. Transcript 'KH2012:KH.C1.482.v2....' > 
  5. Transcript 'Mooccu.CG.ELv1_2.S48...'

Transcript Model

Transcript Id

Mooccu.CG.ELv1_2.S481660.g24792.01.t

Possible name(s)

SOX13; SOX5; SOX6

Gene model

Mooccu.CG.ELv1_2.S481660.g24792

Location

S481660 [3,918 / 14,734]

Sequences

Amino acid sequence

Length: 414

>Mooccu.CG.ELv1_2.S481660.g24792.01.p
MLAGFGMSSGQQQLMMTHGASTLPFASSDHAVATGQLAAAEKARQEAKSSSPQFDNSHTI
KKSRKASSEASGTSSPRNRIHGKAGRKSASPVVKDERHETVEERVSPLHGMTGERPLNLS
RDKNSGSESEEEKSPNESTKYGEIADLFRTQKAFAAMAKEKAGEFFSSSANHNPADYYAF
MGSPKHQKNGAFSPQEQTKYSQSSQRRSPDEQSDSRLARDSKRPDTHIKRPMNAFMVWAK
DERRKILQAYPDMHNSNISKILGAKWKKMSNVDKQPYYDEQARLSKIHMEKFPDYKYKPR
PKRTCIVDGKKLRISEYKALMKMRKSDFRGNGMYGNGTTSNSQSSPAIPYPSPPTMVTPP
TMVSSAYSYPTPSHASLSNIASLGHHLSTNPYNLPLGVDRKDSQDSRSSTPTE*

Nucleotide sequence

Length: 3,110

>Mooccu.CG.ELv1_2.S481660.g24792.01.t
GTCGAATTATCCCGTCATAGTCGAAATGACAATTACCGAGATCAGTCGCTTTTAAATATA
CAAATACGTAATTCGTGTTTACGATTAATTTATTTTCCTCGATTATTTTAATCAGAGTCA
AGTTACGGAGAAGAGCAGTTGGATATTACGACAATTTTACCGAAGTTAAAATCGTATTTT
ATCGGTCGAAATATTTGTGATAGACGGTGCTAGCGTCGCTACTATGATGCTTGCAGTAAA
TCACCACATGGCATCGACCAATGGCGGAACAAAAGTAGATTCCCCGCCTCCAGAAAGCCC
AGAAGTCAACGGATTCAAAAACCAGGAAGAAGAAGAAACTACGAGCCGACAAACGGAGGA
ATCCTCCCCTCATCTCAACTCTTATTCCCCTGGAAGAATTTATAATAATGGAAGTCCTCA
TATGGAAGCATCTGCTGGATACATGTACAGAAGATACTCTGAGGACAATCCGTCTTCAAG
ATTCCTTCCTCCGGGATGCAGGAGACATTATCCTGACTCGGATGACTCGCAGGATAAATC
GTACGAAGAAGTATTCAAGAAGCGACGTCGAACGAATGAAGAAAATGGTGACGGGCATAC
AGAGGAGGAGACTAAAGCACGAACTTTTACTCCGGAAGAAAATATATCCGACAAAAAAGA
AAATACGAAATCACCGATTGCATGTTCGCTTACGGAATCGAAAGAATCTGCGGAATCGGT
TATTGAAAAAGAGAAAAAATTAGCGGAGATGATTGACCAACTTACGACGTTGCGACGACA
ACTTAAGGAAGAGAGATCGAAAGCAGCTGCCAGCACAGTCCTCAAGGAACAAGAACAATT
GGAATTGGCACGGCAGCAACAAGACCAGATTGCGCGGCAAAGACAACAATTGGCGGAGCA
ACAAAACTGCATTGCACTTCTTCACAAACACTTGCAGGCGATCGTATCAAACCAACAATC
AGAACAGATGATGTCGAATCCTTTGCTACGAATGGCGATGGCTTACGGACCCAATGCAAA
TGAAGCTATGATGTCACAACCGGCATTTCTCGCTGCGTATAAAGGCATGCTAGGTATGAA
ATTCTGGTTTGCTAAATTTGCCTTTCAAATGACAAAATATCTTTTGTAGATCCATATGCA
CATATGCTTGCTGGATTCGGCATGTCCTCAGGACAGCAACAACTGATGATGACTCACGGC
GCCTCCACACTCCCATTCGCTTCATCTGATCATGCGGTGGCTACCGGACAACTCGCGGCC
GCCGAAAAGGCACGGCAAGAAGCAAAAAGCTCATCTCCACAATTCGATAACTCACACACG
ATAAAGAAATCCCGAAAAGCATCATCAGAAGCCTCAGGAACGTCTTCGCCAAGAAATAGA
ATTCATGGAAAAGCAGGACGAAAGTCAGCCTCGCCCGTTGTTAAGGACGAAAGGCACGAG
ACTGTCGAAGAACGTGTCTCACCACTGCATGGCATGACTGGGGAGAGGCCATTGAACCTG
TCACGTGACAAGAATAGTGGGAGTGAGAGCGAAGAGGAAAAATCACCAAATGAAAGCACA
AAATATGGTGAAATTGCGGATTTATTTCGAACACAGAAAGCTTTTGCCGCCATGGCGAAA
GAAAAGGCGGGAGAATTCTTTTCATCATCAGCCAATCACAATCCAGCTGATTACTACGCG
TTCATGGGCTCACCAAAGCACCAGAAAAATGGGGCATTTTCTCCTCAAGAACAAACAAAA
TACTCACAATCATCTCAAAGAAGAAGTCCTGATGAACAAAGCGATTCAAGACTGGCACGT
GATTCCAAACGACCAGACACTCACATCAAGCGACCAATGAACGCATTTATGGTGTGGGCG
AAAGACGAACGCAGGAAGATTTTACAGGCATACCCTGACATGCACAACTCCAACATCAGT
AAGATTCTTGGAGCCAAATGGAAGAAGATGTCCAATGTTGATAAACAGCCATACTATGAT
GAGCAAGCCAGATTGAGTAAGATTCACATGGAGAAGTTTCCTGATTACAAATACAAACCA
AGACCGAAACGAACTTGCATCGTAGACGGAAAGAAATTACGTATATCTGAGTACAAGGCG
TTGATGAAGATGCGCAAGAGTGATTTTCGAGGGAATGGAATGTATGGAAATGGCACTACT
TCCAACAGCCAATCATCGCCGGCAATTCCATACCCCTCCCCGCCCACCATGGTTACCCCG
CCCACAATGGTATCTTCGGCGTATTCTTACCCAACCCCTAGCCATGCGAGTTTGAGCAAC
ATTGCGAGCTTGGGGCATCATCTCTCAACGAATCCTTACAACCTTCCTCTTGGAGTAGAT
AGGAAGGATTCACAAGACTCCAGATCATCAACGCCAACAGAATAAACTGTCAATCAACAA
ACGTTCTTTTTAAAACGTACTTAGCCATCTATCACTGCCCCGTACAGCCTTGCCAGCTTT
TTATAACAAACTCGCAGGACTCGATAAGACAAAGGTCACTGTTTCGGCCGATCGGTGAAT
TTACTAACAAACACTTGGTGTCGTCGTTTGGAACAATGATCATTATATTCGTATTGTGAT
GTTTCAATCGACATTAGACGACTTTACAATGAGATCAAACTAACAATACCAATTGTCTTC
ATTTTATTTTTCTTTCTATATATATTTTTTCACTGTTTTTGTCAAATTAAGCTGTTTTAA
TTTCTATTTAGCCCCTAAAATTTATGGACATCTTGTTCCTAAATTAAGCACGGAGGCATC
CACTGCCCTATACATAGTCGTTCTCTTGTTCCTATAGCGAGCACTGTTGTCATGCTTATT
TAACAGGCTTTGAAAATTATATTTATTATATCATAATGCACGTGTACATAACAATCAACC
ATTATCGCCATAATTATGACGTCAAAGAATATTTCTCTTTGTAAAATGCTACTGGCGCCT
CATAAAATCATCGCACAATTTTGAGCAATCAAATTTGCAATTCCTAACTCTATAGCTTGC
TGCTTTTCATCAGTCATAACCAACCACAAGCCATCTTTTGTCTTCCACGTCACAAAGTTT
AATTTTGATTTTTTTTTGCATTTTAGAAATAAAACTTTTTTAAGCCAAAT

InterProScan

Gene3D
HMG_box_dom_sf (IPR036910) - T[606-687] 3.3E-27
SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[608-686] 6.55E-25
SMART
HMG_box_dom (IPR009071) - T[608-678] 6.5E-24
ProSiteProfiles
HMG_box_dom (IPR009071) - T[609-677] 20.281
Pfam
HMG_box_dom (IPR009071) - T[609-677] 5.9E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX5_HUMAN 73.333 % 201 7.98E-58
SOX6_HUMAN 57.955 % 204 1.28E-58
SOX13_HUMAN 66.667 % 191 5.14E-55