- Clone 'ma122n11' >
- Clone 'ma337b08' >
- Clone 'cima858500' >
- Transcript 'Mooccu.CG.ELv1_2.S42...'
Transcript Model
Transcript Id
Mooccu.CG.ELv1_2.S425308.g20156.01.t
Possible name(s)
NR1I2; RORA; VDR
Gene model
Location
S425308 [14,615 / 27,369]
Amino acid sequence
Length: 573
>Mooccu.CG.ELv1_2.S425308.g20156.01.p
MAMATSRLSSSSSLSSTSDRRCSLDSTKSPTISEKGTGSTKSKETHKTEKICVVCGDGAT
GIHFAAMTCEGCKGFFRRSMKKEVQFLCAFDNNCTISRANRKHCQSCRLNKCLAVGMDAS
LIMSDESVNRKRELIRQNREKRALVRAKKVQQELEMQMKENKISRENSQIRMSMADKLLI
ETLLKGHNASYDFSYEEYDTFRGTEVIPAPVDVDRHPSDVTLAWLVASLNPKTSKSETSS
DIAAKSEPLSPDGPFDENVATPQEMIPQEVLDIFSSLHGVPQTSPPPAEDQIMPPQFSAS
NNDAPSTSFKNYDSYKSEHLPTNIHLPEQPEVSSADSQIGMSDMHSNMGGGETASFLQSL
LAKQGISLAFMQDEKTRHLLQHFCDIMTWGIKKVIEFCKSIPEFQEISTVDQINLLRGGC
LEMLVLRSYFAFAAEGNKYMSDKFQYTPMDFLQAGASAEFVEMYGNVHERMRKMELKVEE
ICLLIALVLFSPDRPGLVEVKKIEEMQSRISTALRAYEFTHRPEREAIRTISEIILLMPL
LRTINVLFSNTILTLKGTNEEDINPLILEVNP*
Nucleotide sequence
Length: 2,324
>Mooccu.CG.ELv1_2.S425308.g20156.01.t
AGCATGTTTACAATTATATAATTTTATTGCCAATAGTTATCTGTTGACATTATTTTTATG
GCTATGGCAACATCAAGGTTGTCTTCTAGCTCTTCATTAAGCTCAACATCAGATCGAAGA
TGTAGCTTGGATAGCACTAAATCGCCAACCATCAGTGAAAAAGGTACTGGTAGTACTAAA
TCGAAAGAAACGCATAAAACAGAGAAAATATGTGTAGTCTGTGGAGACGGTGCTACTGGT
ATTCATTTTGCAGCAATGACTTGCGAAGGCTGCAAAGGATTTTTCCGAAGGTCAATGAAA
AAAGAAGTGCAGTTTCTATGTGCATTTGATAACAATTGCACTATAAGCCGAGCAAACAGA
AAACATTGCCAATCATGTAGATTGAACAAATGCTTAGCTGTCGGTATGGATGCATCGTTA
ATCATGAGCGACGAAAGTGTTAATCGAAAACGGGAGTTAATTCGCCAAAATCGTGAAAAG
CGTGCTTTGGTTCGAGCAAAGAAAGTGCAACAAGAGCTGGAAATGCAAATGAAAGAGAAT
AAAATTTCAAGAGAAAACTCACAAATTCGAATGTCAATGGCTGATAAGCTGTTGATCGAA
ACATTATTGAAGGGACACAATGCAAGCTATGACTTTTCCTATGAAGAATATGATACATTT
CGAGGAACAGAGGTTATTCCAGCACCAGTTGACGTTGACAGACATCCTTCTGATGTAACA
CTTGCGTGGCTTGTTGCATCACTAAATCCTAAGACAAGTAAAAGTGAAACATCTTCCGAT
ATTGCAGCCAAGTCAGAACCATTGTCACCAGACGGTCCGTTTGATGAAAACGTGGCAACG
CCTCAAGAAATGATTCCACAAGAAGTATTAGATATATTTAGCTCTCTACATGGCGTACCA
CAAACAAGCCCACCACCTGCAGAAGATCAAATAATGCCTCCACAATTCTCAGCAAGCAAC
AATGACGCACCTTCCACGTCATTCAAAAATTACGACAGCTATAAATCTGAACATCTGCCC
ACGAACATCCACTTACCAGAGCAACCAGAGGTATCATCAGCCGATAGCCAGATTGGCATG
TCCGATATGCACAGCAACATGGGTGGTGGTGAAACGGCATCGTTTCTGCAAAGTCTATTA
GCGAAACAGGGAATATCATTAGCTTTCATGCAGGATGAGAAGACAAGACATCTTCTTCAA
CATTTCTGTGATATCATGACATGGGGGATTAAAAAGGTTATAGAATTTTGCAAGTCAATT
CCGGAGTTCCAGGAAATATCCACAGTTGATCAAATTAATTTGCTCAGAGGAGGCTGCCTC
GAGATGCTTGTGTTGCGATCGTACTTTGCGTTTGCTGCTGAAGGGAATAAGTACATGTCC
GATAAATTCCAGTACACGCCGATGGATTTCTTGCAAGCGGGAGCAAGCGCAGAATTTGTT
GAGATGTACGGAAACGTACATGAACGCATGCGCAAAATGGAGTTGAAAGTGGAAGAGATT
TGTTTGTTGATTGCGCTTGTACTCTTTTCTCCGGACAGACCAGGGTTGGTGGAAGTTAAG
AAGATTGAAGAAATGCAATCGAGAATTAGTACTGCGTTACGCGCTTACGAATTCACTCAT
CGACCCGAACGGGAGGCAATTCGAACCATCTCTGAGATTATCCTACTGATGCCATTGCTC
CGAACTATCAACGTTTTGTTCTCAAACACGATATTAACCCTCAAAGGAACAAACGAAGAA
GATATTAACCCATTGATACTCGAAGTAAATCCATAGTTTGAATTTTTAACATAATGACAA
CAATTTTCAAGATTATTTCCTCTAGTTCAACCTGCATCGTCATGTCTTTATATCTACAGT
ATATTTTATTTGCATTTTTTGTCCAAACTCTTTGTGTCAAGTTTCTTATTTTCCTATGCT
ATGGTGTGCATTTATTTTTATTTTTTTTTGTTATGGTATATATATATTTGTATATAAATT
ATGTTTTCTCAGAGTGTTACTTTTTGTTTATTTCTGACCAATTAACATTTGCAATCACTT
GACATTTAGTTCCTTAGTTTCCATTATGTCAGCAAATGCCTCAGCTTGTGTACTAAGCTT
CCTTTTAGTTTCACCACATATTTTATACTAAACTTTTTATCTTTTACCGATAGAGTCCTA
TCATATTTAATTTTAACGAACAAGCTTTCTAACGTTTTATTAATTTTAGTTCTTACATGC
CTGTTGTATAAACGCCTATGCAAGTTGTACTCATTTTGCCATGTACATAAGTGAAAGTGT
GTATAAAGTTCGTTCAATATGTTAATAATAAATATTTCCTGCCA
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[68-143] 18.58 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[68-170] 4.9E-30 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[68-139] 2.9E-32 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[70-137] 4.5E-28 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[71-87] 3.1E-15 - T[87-102] 3.1E-15 - T[120-128] 3.1E-15 - T[128-136] 3.1E-15 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[71-97] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[132-142] 1.4E-14 - T[405-426] 1.4E-14 - T[426-442] 1.4E-14 - T[493-508] 1.4E-14 - T[552-569] 1.4E-14 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[382-589] 2.75E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[398-567] 1.3E-20 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[404-564] 2.0E-36 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VDR_HUMAN | 42.484 % | 144 | 1.41E-37 |
| NR1I3_HUMAN | 36.747 % | 115 | 5.12E-28 |
| NR1I2_HUMAN | 35.87 % | 124 | 1.22E-30 |