Aniseed - Transcript Card

Transcript Model

Transcript Id

Mooccu.CG.ELv1_2.S374731.g16675.03.t

Possible name(s)

ACTA2; ACTB; ACTG1

Gene model

Mooccu.CG.ELv1_2.S374731.g16675

Location

S374731 [4,112 / 4,503]

Sequences

Amino acid sequence

Length: 112

>Mooccu.CG.ELv1_2.S374731.g16675.03.p
EEDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP

Nucleotide sequence

Length: 336

>Mooccu.CG.ELv1_2.S374731.g16675.03.t
GAAGAAGATGATGTTGCTGCATTAGTTGTTGATAATGGATCCGGTATGTGCAAAGCCGGT
TTTGCTGGAGATGATGCTCCAAGAGCCGTCTTCCCTTCAATCGTAGGACGACCAAGACAT
CAGGGTGTCATGGTTGGAATGGGCCAAAAAGATTCATACGTCGGAGATGAAGCCCAAAGC
AAGAgaggtatccttacacttaaatacccaatcgagcacggaatcgtcacaaactgggac
gatatggagaagatctggCATCACACTTTCTACAATGAACTCCGTGTTGCACCAGAAGAA
CATCCCGTCCTCCTTACCGAAGCCCCACTTAACCCA

InterProScan

PANTHER	Actin (IPR004000) - T[2-112] 2.5E-76
Pfam	Actin (IPR004000) - T[3-112] 4.1E-39
PRINTS	Actin (IPR004000) - T[26-35] 3.6E-24 - T[49-60] 3.6E-24 - T[61-83] 3.6E-24
ProSitePatterns	Actin_CS (IPR004001) - T[53-63] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
ACTG_HUMAN	96.396 %	234	1.92E-78
ACTB_HUMAN	98.198 %	237	2.93E-79
ACTA_HUMAN	92.857 %	229	3.21E-76