- Transcript 'Phfumi.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S8.g00194.01.t
Possible name(s)
RNF17; TDRD1; TDRD6
Gene model
Location
S8 [219,145 / 221,869]
Amino acid sequence
Length: 896
>Phfumi.CG.MTP2014.S8.g00194.01.p
KDGKSVTLYVISIPPEVTENALRNLFSTFGNVTLVNILPPKHGQTCKAGFVEYENLIQAE
LAIENLNGIKLGEYTLKVEKARPRKPKHEEGEKNDYLSLIQKLEKGPLMEKELLDITNNN
NAGNFKNPLLSGCVSSLSKNFQPVEKPHCNKTSNQGTFTAFKEKRNPCEVCGQLTKSMCS
SCSSVFYCGRNCQVQDWRRHKQNCNHNNSRKSKKTETDEDSDTPLIVVDSSVCDQVAKKL
KAVIKQSTAGDCVKAKDEVSDTSIKSFTSQISCGDLLRFSVTDVDAENASFICQSSMPND
IDSLTELQVSLNKFYNSGTALKAKLPKVGNVFATVYAEDGQWYRAVVERIFFDGKALVKF
VDYGNKEMVQVDNLYVLEKNFSTQCAFALNCKLDGIKRSEPWNDKAMEYILKALSGSNLI
IDACIAEVVGDVAYAEVKANGVGMAENLLHLGCVSPMTNIGKVKNDVSECVTVENVNPAL
HIMENKIIQKENPKLEGPVKTYEERVALSSIKVPDGSFQMIISHTSSPDSIFCQLIQKGL
VELQTQFQELSQICSSQKAPSCIFEVGGICAAMFPEDNVWYRAKIVGLEEKDGLIKVQFV
DFGNTEIIPKQLIQKLPSQFTLLPIQAFEASLSGCYAKENTWSKDCLMLIKTWQNKSFSA
CVDGTCADTGKPSLTVMVDRNSSLNELLVREKYALEKPYVEIVPIAPKFDVCNAIKKQKP
SLGESVDIIITECNQPGEFFCQLVSEQLQELAKMLLELTKHCTEAPTFQFDCLPEMFCSA
LFKDGAWYRAQIKQVDGDTIFVEYVDYGNSALISKNEVQLLPAMFGSLPVQAFKCVLADA
KPVCKEGWCEEFINVTQKLVGKCLHAKIVSHDDMLFIKVPDLLNSLIVEKCALYCI
Nucleotide sequence
Length: 2,691
>Phfumi.CG.MTP2014.S8.g00194.01.t
AAAGATGGAAAAAGTGTTACCCTGTATGTCATAAGTATTCCACCTGAAGTGACTGAAAAT
GCATTGCGGAACCTTTTTTCAACTTTTGGTAATGTCACATTGGTAAACATTCTACCACCA
AAACATGGCCAGACATGCAAGGCTGGGTTTGTGGAGTATGAAAACCTTATTCAAGCTGAG
TTGGCAATTGAAAACTTGAATGGCATTAAACTTGGAGAATACACATTAAAGGTTGAAAAA
GCAAGACCTCGCAAACCAAAGCATGAAGAAGGTGAAAAAAATGATTATCTTTCCCTTATT
CAAAAATTGGAAAAAGGCCCATTGATGGAAAAAGAACTGCTTGACATTACAAACAACAAT
AACGCTGGCAATTTTAAAAATCCCTTGCTTTCTGGATGTGTTTCCAGTTTGAGCAAAAAT
TTCCAACCAGTAGAAAAACCACATTGCAACAAAACTTCGAATCAAGGAACATTCACTGCT
TTTAAGGAAAAGAGAAACCCATGTGAAGTGTGTGGTCAGTTGACAAAGAGCATGTGTAGT
TCATGCAGTTCTGTCTTTTACTGTGGTCGCAACTGCCAGGTGCAAGATTGGAGAAGGCAT
AAGCAAAACTGCAATCACAACAATTCAAGAAAATCAAAAAAAACTGAAACTGATGAGGAC
AGTGACACACCACTGATTGTTGTTGACAGTAGTGTTTGTGATCAGGTTGCAAAGAAGCTA
AAGGCTGTAATCAAGCAATCAACTGCAGGCGATTGTGTCAAGGCAAAAGATGAAGTGTCT
GATACCAGCATCAAATCTTTTACCTCCCAAATATCATGTGGTGACCTACTGAGATTCTCT
GTCACTGATGTGGATGCTGAAAATGCCAGTTTTATTTGTCAGTCATCGATGCCAAATGAC
ATAGATAGCCTAACTGAATTGCAAGTCAGTTTAAACAAGTTTTATAACAGCGGAACAGCT
TTGAAAGCTAAATTACCAAAAGTGGGCAATGTTTTTGCTACAGTGTATGCAGAAGATGGT
CAGTGGTATAGGGCAGTGGTCGAACGTATCTTTTTTGATGGGAAAGCTTTGGTAAAATTT
GTTGATTATGGTAACAAGGAGATGGTTCAAGTTGACAACTTGTATGTCCTTGAAAAAAAC
TTTTCCACTCAATGTGCCTTTGCTCTAAACTGTAAACTTGATGGTATAAAAAGATCAGAG
CCATGGAATGACAAAGCAATGGAGTATATTTTAAAAGCTTTGAGTGGCAGCAATTTGATA
ATTGATGCATGTATTGCCGAAGTGGTTGGTGATGTGGCATATGCAGAAGTTAAAGCCAAT
GGGGTTGGAATGGCAGAAAACCTCTTGCATCTTGGCTGTGTTTCACCAATGACAAACATT
GGCAAGGTTAAAAATGATGTCAGTGAATGTGTCACAGTGGAGAATGTAAATCCAGCTTTG
CATATAATGGAAAATAAAATCATACAAAAGGAGAACCCAAAGCTTGAGGGTCCAGTCAAA
ACGTATGAGGAACGTGTTGCTTTGTCATCAATAAAAGTTCCAGATGGATCCTTTCAGATG
ATCATTTCTCACACATCTTCTCCAGATTCCATTTTTTGTCAGTTGATCCAAAAAGGCCTT
GTTGAGTTGCAAACACAGTTTCAAGAACTATCACAGATTTGTTCATCTCAAAAAGCACCA
TCTTGCATTTTTGAAGTTGGTGGCATCTGCGCTGCAATGTTTCCAGAAGATAACGTTTGG
TATCGTGCAAAAATAGTTGGACTGGAAGAGAAAGATGGTTTAATAAAAGTCCAGTTTGTT
GATTTTGGTAACACTGAAATTATTCCCAAACAACTTATTCAGAAACTTCCATCACAATTT
ACTTTACTTCCAATTCAAGCTTTCGAAGCATCTTTAAGTGGTTGCTATGCCAAGGAAAAT
ACCTGGTCTAAAGACTGCCTAATGCTTATTAAAACATGGCAGAATAAATCTTTTTCAGCT
TGCGTGGATGGAACCTGTGCTGATACTGGCAAACCAAGTTTAACTGTCATGGTGGACAGA
AATTCATCATTAAATGAGTTGTTAGTGAGGGAGAAATATGCCTTGGAAAAGCCATATGTT
GAAATTGTACCTATTGCACCAAAATTTGATGTGTGTAATGCTATTAAGAAACAGAAACCC
TCCCTGGGTGAAAGTGTTGATATTATTATAACTGAATGCAATCAACCTGGAGAATTTTTC
TGTCAATTGGTATCTGAACAACTGCAGGAATTAGCAAAGATGTTGTTGGAATTAACCAAG
CATTGCACTGAAGCACCAACCTTCCAATTTGATTGTTTACCTGAAATGTTCTGTTCTGCC
TTGTTCAAGGATGGAGCCTGGTACAGGGCACAAATTAAACAGGTTGATGGCGACACAATT
TTTGTTGAATATGTTGATTATGGAAATTCAGCACTGATTTCAAAGAATGAAGTTCAACTA
CTACCTGCCATGTTTGGATCCCTTCCTGTTCAGGCATTTAAATGTGTATTGGCAGATGCT
AAACCTGTTTGCAAAGAAGGTTGGTGTGAAGAGTTCATCAATGTCACTCAAAAGCTGGTA
GGAAAATGCTTGCATGCAAAGATAGTGTCTCATGATGACATGCTTTTCATCAAAGTGCCA
GATTTGCTGAACTCTTTGATTGTTGAAAAATGTGCATTGTACTGCATTTAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-97] 6.6E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[4-90] 2.28E-21 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[6-83] 15.92 |
| SMART |
RRM_dom (IPR000504) - T[7-79] 1.5E-17 |
| Pfam |
RRM_dom (IPR000504) - T[8-77] 2.2E-14 |
| ProSiteProfiles |
Znf_MYND (IPR002893) - T[168-204] 11.214 |
| ProSitePatterns |
Znf_MYND (IPR002893) - T[168-204] . |
| Pfam |
Znf_MYND (IPR002893) - T[168-204] 2.6E-10 |
| Pfam |
Tudor (IPR002999) - T[279-395] 3.6E-17 - T[516-634] 3.4E-26 - T[723-838] 2.8E-23 |
| Gene3D |
SNase_OB-fold_sf (IPR035437) - T[281-453] 7.8E-24 - T[521-694] 9.7E-34 - T[729-873] 4.5E-31 |
| SMART |
Tudor (IPR002999) - T[324-382] 3.1E-13 - T[562-621] 3.8E-14 - T[771-826] 6.6E-9 |
| ProSiteProfiles |
Tudor (IPR002999) - T[325-384] 16.124 - T[563-623] 18.764 - T[765-828] 12.235 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TDRD1_HUMAN | 26.109 % | 196 | 1.14E-51 |
| TDRD6_HUMAN | 21.263 % | 94.4 | 1.66E-19 |
