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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C9.220.v2....'
  2. Transcript 'Phfumi.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S8756.g08180.02.t

Possible name(s)

GRWD1; RBBP4; RBBP7

Location

S8756 [826 / 2,303]

Sequences

Amino acid sequence

Length: 439

>Phfumi.CG.MTP2014.S8756.g08180.02.p
LFFNKNMGEKDGNYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVT
KPEGKDYTVHRLILGTHTSDEQNHMIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGK
IEIEIKINHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPNGECCPDLRLC
GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDVGGKPREGRILDARNVYTGHTAVVEDVS
WHLLHESLFGSVADDQKLMIWDTRSNVCTKPSHTVDAHTAEVNCLSFNPYSEFILATGSA
DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ
SAEDAEDGPPELLFVHGGHTAKISDFSWNPNEPWVACSVSEDNIMQVWQMAENIYNDEEP
EPGSSTAAAAELEQNASCT

Nucleotide sequence

Length: 1,320

>Phfumi.CG.MTP2014.S8756.g08180.02.t
TTGTTTTTTAATAAAAATATGGGTGAAAAAGATGGAAACTATGATGATGCAGTGGAGGAA
AGAGTGATCAATGAAGAATACAAAATATGGAAGAAAAACACTCCATTCCTCTACGATCTT
GTAATGACCCATGCTCTGGAATGGCCAAGTTTAACCTGCCAATGGCTTCCTGACGTTACC
AAGCCAGAAGGCAAGGATTACACTGTCCACCGTTTAATTCTGGGAACACACACTTCTGAT
GAACAGAACCACATGATTATCGCAAGTGTCCAGCTACCAACCGATGATGCTCAATTCGAT
GCTTCCCATTATGATAGCGAACGCGGAGAGTTTGGTGGATTTGGCTCTGTAAGCGGTAAA
ATTGAAATAGAGATCAAGATAAATCATGAAGGAGAAGTCAATCGTGCACGATTCATGCCC
CAAAATCCATGCATCATTGGAACCAAAACACCATCCAGTGACGTTCTTGTATTTGATTAC
ACCAAGCATCCAAGTAAACCTGATCCAAATGGAGAGTGTTGTCCAGATCTGAGGCTCTGT
GGTCATCAAAAGGAAGGCTATGGCTTGTCATGGAATCCAAATCTTAGTGGTCACCTACTT
AGTGCCTCCGATGACCACACGATTTGCTTGTGGGATGTTGGAGGTAAGCCAAGGGAGGGA
AGAATTCTGGATGCACGTAATGTCTACACTGGCCACACAGCAGTTGTTGAAGACGTTTCC
TGGCATCTCCTCCATGAGAGTTTGTTTGGCTCCGTTGCTGATGACCAGAAGCTTATGATT
TGGGATACAAGATCTAATGTTTGCACAAAACCAAGCCACACAGTTGATGCGCATACTGCT
GAAGTAAACTGTCTGTCATTTAATCCATACAGTGAGTTCATTTTGGCAACTGGATCTGCT
GACAAAACAGTTGCCTTGTGGGATTTAAGAAACCTGAAGCTGAAACTGCATTCATTTGAG
TCACACAAGGATGAGATTTTCCAGGTTCAATGGTCTCCTCATAATGAAACAATCCTGGCC
TCAAGTGGAACTGACCGTCGCTTGAACGTCTGGGATCTAAGCAAAATTGGTGAAGAACAA
AGTGCAGAAGATGCTGAAGATGGCCCTCCTGAACTTCTCTTTGTTCATGGTGGCCACACA
GCTAAAATATCTGACTTTTCCTGGAATCCAAATGAGCCATGGGTAGCATGCTCTGTGTCA
GAAGACAACATCATGCAAGTCTGGCAAATGGCTGAGAACATTTACAATGATGAAGAACCG
GAACCTGGCAGTTCCACTGCTGCTGCTGCAGAGCTTGAGCAAAATGCCTCTTGTACATAA

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[8-428] 3.1E-167
Pfam
Histone-bd_RBBP4_N (IPR022052) - T[25-93] 2.5E-28
SMART
WD40_repeat (IPR001680) - T[118-159] 34.0 - T[170-212] 3.0E-5 - T[222-262] 0.18 - T[268-308] 8.2E-9 - T[312-352] 7.0E-7 - T[369-409] 0.0012
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[120-416] 6.51E-50
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[179-418] 33.933
ProSiteProfiles
WD40_repeat (IPR001680) - T[179-213] 11.277 - T[229-271] 9.105 - T[275-311] 13.85 - T[319-361] 12.948
Pfam
WD40_repeat (IPR001680) - T[188-212] 0.1 - T[228-262] 0.15 - T[270-308] 2.3E-7 - T[316-352] 3.8E-4 - T[373-408] 0.001
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[199-213] . - T[295-309] . - T[339-353] .
PRINTS
G-protein_beta_WD-40_rep (IPR020472) - T[199-213] 1.6E-8 - T[295-309] 1.6E-8 - T[339-353] 1.6E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GRWD1_HUMAN 28.99 % 121 3.33E-30
RBBP7_HUMAN 84.434 % 759 0
RBBP4_HUMAN 90.12 % 801 0