- Transcript 'Phfumi.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S8756.g08180.02.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
S8756 [826 / 2,303]
Amino acid sequence
Length: 439
>Phfumi.CG.MTP2014.S8756.g08180.02.p
LFFNKNMGEKDGNYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVT
KPEGKDYTVHRLILGTHTSDEQNHMIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGK
IEIEIKINHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPNGECCPDLRLC
GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDVGGKPREGRILDARNVYTGHTAVVEDVS
WHLLHESLFGSVADDQKLMIWDTRSNVCTKPSHTVDAHTAEVNCLSFNPYSEFILATGSA
DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ
SAEDAEDGPPELLFVHGGHTAKISDFSWNPNEPWVACSVSEDNIMQVWQMAENIYNDEEP
EPGSSTAAAAELEQNASCT
Nucleotide sequence
Length: 1,320
>Phfumi.CG.MTP2014.S8756.g08180.02.t
TTGTTTTTTAATAAAAATATGGGTGAAAAAGATGGAAACTATGATGATGCAGTGGAGGAA
AGAGTGATCAATGAAGAATACAAAATATGGAAGAAAAACACTCCATTCCTCTACGATCTT
GTAATGACCCATGCTCTGGAATGGCCAAGTTTAACCTGCCAATGGCTTCCTGACGTTACC
AAGCCAGAAGGCAAGGATTACACTGTCCACCGTTTAATTCTGGGAACACACACTTCTGAT
GAACAGAACCACATGATTATCGCAAGTGTCCAGCTACCAACCGATGATGCTCAATTCGAT
GCTTCCCATTATGATAGCGAACGCGGAGAGTTTGGTGGATTTGGCTCTGTAAGCGGTAAA
ATTGAAATAGAGATCAAGATAAATCATGAAGGAGAAGTCAATCGTGCACGATTCATGCCC
CAAAATCCATGCATCATTGGAACCAAAACACCATCCAGTGACGTTCTTGTATTTGATTAC
ACCAAGCATCCAAGTAAACCTGATCCAAATGGAGAGTGTTGTCCAGATCTGAGGCTCTGT
GGTCATCAAAAGGAAGGCTATGGCTTGTCATGGAATCCAAATCTTAGTGGTCACCTACTT
AGTGCCTCCGATGACCACACGATTTGCTTGTGGGATGTTGGAGGTAAGCCAAGGGAGGGA
AGAATTCTGGATGCACGTAATGTCTACACTGGCCACACAGCAGTTGTTGAAGACGTTTCC
TGGCATCTCCTCCATGAGAGTTTGTTTGGCTCCGTTGCTGATGACCAGAAGCTTATGATT
TGGGATACAAGATCTAATGTTTGCACAAAACCAAGCCACACAGTTGATGCGCATACTGCT
GAAGTAAACTGTCTGTCATTTAATCCATACAGTGAGTTCATTTTGGCAACTGGATCTGCT
GACAAAACAGTTGCCTTGTGGGATTTAAGAAACCTGAAGCTGAAACTGCATTCATTTGAG
TCACACAAGGATGAGATTTTCCAGGTTCAATGGTCTCCTCATAATGAAACAATCCTGGCC
TCAAGTGGAACTGACCGTCGCTTGAACGTCTGGGATCTAAGCAAAATTGGTGAAGAACAA
AGTGCAGAAGATGCTGAAGATGGCCCTCCTGAACTTCTCTTTGTTCATGGTGGCCACACA
GCTAAAATATCTGACTTTTCCTGGAATCCAAATGAGCCATGGGTAGCATGCTCTGTGTCA
GAAGACAACATCATGCAAGTCTGGCAAATGGCTGAGAACATTTACAATGATGAAGAACCG
GAACCTGGCAGTTCCACTGCTGCTGCTGCAGAGCTTGAGCAAAATGCCTCTTGTACATAA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[8-428] 3.1E-167 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[25-93] 2.5E-28 |
| SMART |
WD40_repeat (IPR001680) - T[118-159] 34.0 - T[170-212] 3.0E-5 - T[222-262] 0.18 - T[268-308] 8.2E-9 - T[312-352] 7.0E-7 - T[369-409] 0.0012 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[120-416] 6.51E-50 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[179-418] 33.933 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[179-213] 11.277 - T[229-271] 9.105 - T[275-311] 13.85 - T[319-361] 12.948 |
| Pfam |
WD40_repeat (IPR001680) - T[188-212] 0.1 - T[228-262] 0.15 - T[270-308] 2.3E-7 - T[316-352] 3.8E-4 - T[373-408] 0.001 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[199-213] . - T[295-309] . - T[339-353] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[199-213] 1.6E-8 - T[295-309] 1.6E-8 - T[339-353] 1.6E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 28.99 % | 121 | 3.33E-30 |
| RBBP7_HUMAN | 84.434 % | 759 | 0 |
| RBBP4_HUMAN | 90.12 % | 801 | 0 |