Login
Help

TRANSCRIPT CARD

Submit your Data

  1. EST 'mae39d15'
  2. Transcript 'Harore.CG.MTP2014.S1...'
  3. Transcript 'KH2012:KH.C4.213.v1....'
  4. Transcript 'KH2012:KH.C9.220.v1....'
  5. Transcript 'Phfumi.CG.MTP2014.S8...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S8756.g08180.01.t

Possible name(s)

GRWD1; RBBP4; RBBP7

Location

S8756 [826 / 2,285]

Sequences

Amino acid sequence

Length: 433

>Phfumi.CG.MTP2014.S8756.g08180.01.p
MGEKDGNYDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVTKPEGKD
YTVHRLILGTHTSDEQNHMIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGKIEIEIK
INHEGEVNRARFMPQNPCIIGTKTPSSDVLVFDYTKHPSKPDPNGECCPDLRLCGHQKEG
YGLSWNPNLSGHLLSASDDHTICLWDVGGKPREGRILDARNVYTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNVCTKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE
DGPPELLFVHGGHTAKISDFSWNPNEPWVACSVSEDNIMQVWQMAENIYNDEEPEPGSST
AAAAELEQNASCT

Nucleotide sequence

Length: 1,302

>Phfumi.CG.MTP2014.S8756.g08180.01.t
ATGGGTGAAAAAGATGGAAACTATGATGATGCAGTGGAGGAAAGAGTGATCAATGAAGAA
TACAAAATATGGAAGAAAAACACTCCATTCCTCTACGATCTTGTAATGACCCATGCTCTG
GAATGGCCAAGTTTAACCTGCCAATGGCTTCCTGACGTTACCAAGCCAGAAGGCAAGGAT
TACACTGTCCACCGTTTAATTCTGGGAACACACACTTCTGATGAACAGAACCACATGATT
ATCGCAAGTGTCCAGCTACCAACCGATGATGCTCAATTCGATGCTTCCCATTATGATAGC
GAACGCGGAGAGTTTGGTGGATTTGGCTCTGTAAGCGGTAAAATTGAAATAGAGATCAAG
ATAAATCATGAAGGAGAAGTCAATCGTGCACGATTCATGCCCCAAAATCCATGCATCATT
GGAACCAAAACACCATCCAGTGACGTTCTTGTATTTGATTACACCAAGCATCCAAGTAAA
CCTGATCCAAATGGAGAGTGTTGTCCAGATCTGAGGCTCTGTGGTCATCAAAAGGAAGGC
TATGGCTTGTCATGGAATCCAAATCTTAGTGGTCACCTACTTAGTGCCTCCGATGACCAC
ACGATTTGCTTGTGGGATGTTGGAGGTAAGCCAAGGGAGGGAAGAATTCTGGATGCACGT
AATGTCTACACTGGCCACACAGCAGTTGTTGAAGACGTTTCCTGGCATCTCCTCCATGAG
AGTTTGTTTGGCTCCGTTGCTGATGACCAGAAGCTTATGATTTGGGATACAAGATCTAAT
GTTTGCACAAAACCAAGCCACACAGTTGATGCGCATACTGCTGAAGTAAACTGTCTGTCA
TTTAATCCATACAGTGAGTTCATTTTGGCAACTGGATCTGCTGACAAAACAGTTGCCTTG
TGGGATTTAAGAAACCTGAAGCTGAAACTGCATTCATTTGAGTCACACAAGGATGAGATT
TTCCAGGTTCAATGGTCTCCTCATAATGAAACAATCCTGGCCTCAAGTGGAACTGACCGT
CGCTTGAACGTCTGGGATCTAAGCAAAATTGGTGAAGAACAAAGTGCAGAAGATGCTGAA
GATGGCCCTCCTGAACTTCTCTTTGTTCATGGTGGCCACACAGCTAAAATATCTGACTTT
TCCTGGAATCCAAATGAGCCATGGGTAGCATGCTCTGTGTCAGAAGACAACATCATGCAA
GTCTGGCAAATGGCTGAGAACATTTACAATGATGAAGAACCGGAACCTGGCAGTTCCACT
GCTGCTGCTGCAGAGCTTGAGCAAAATGCCTCTTGTACATAA

InterProScan

Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[2-422] 3.0E-167
Pfam
Histone-bd_RBBP4_N (IPR022052) - T[19-87] 2.4E-28
SMART
WD40_repeat (IPR001680) - T[112-153] 34.0 - T[164-206] 3.0E-5 - T[216-256] 0.18 - T[262-302] 8.2E-9 - T[306-346] 7.0E-7 - T[363-403] 0.0012
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[114-410] 5.5E-50
ProSiteProfiles
WD40_repeat (IPR001680) - T[173-207] 11.277 - T[223-265] 9.105 - T[269-305] 13.85 - T[313-355] 12.948
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[173-412] 33.933
Pfam
WD40_repeat (IPR001680) - T[182-206] 0.1 - T[222-256] 0.15 - T[264-302] 2.3E-7 - T[310-346] 3.8E-4 - T[367-402] 0.001
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[193-207] . - T[289-303] . - T[333-347] .
PRINTS
G-protein_beta_WD-40_rep (IPR020472) - T[193-207] 1.5E-8 - T[289-303] 1.5E-8 - T[333-347] 1.5E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GRWD1_HUMAN 28.99 % 121 3.36E-30
RBBP7_HUMAN 84.434 % 759 0
RBBP4_HUMAN 90.12 % 801 0