- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Boleac.CG.SB_v3.S22....' >
- Molecular Tool 'p10.27::NICD' >
- Transcript 'Phfumi.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S70.g00816.01.t
Possible name(s)
TBR1; TBX6; TBXT
Gene model
Location
S70 [18,813 / 22,246]
Amino acid sequence
Length: 772
>Phfumi.CG.MTP2014.S70.g00816.01.p
MAYSEVQYPSQHCAVRPQQFQSDMQYYQGVPSRFQAVNENKSWYPNEDHNANSNFHHENN
YQRLSPPGQALSTMWNPINQGQYLNMNVFNGKSAPPANNVNKYGQNDGYRQRINSAASDG
YAAPSSNQWMSAQSPNMYSPTNQFNFPRSRQGSMTDQGQLTPDNYYHTQQNYNNQCMPQH
MPYRATSTPGSCGTNSPPNMSIMPPQPTPTQMQQPSQVPTGEVPIPGKRGSDWELECMGV
EMKLSNANVWKNFDNVVTEMVISKHGRRMFPVLEYELNGLDPNKLYNVFLDFVLANCYVW
KYVDQGWHPNGLAANEEPDFQPGQRVYLHPDSPAPGDVWNKKGASFNKMKLSNHYHEKEK
IITLRTLHKYQPRLHIVEVDHVNPSMQSNLRTFVLPKTTFMTVTLYHDTDVAQLKINLNP
FARSFRDKSLTKKPSDDSNSSNSSSMSQSLSPMTSPENVENSVHDVGDNEPINFDANEIV
KVENPVNSVDLEKAKQFLHKQLNVMSQLVRTSEELERNSTLQSIGSTSQTQLTVSKQGSS
NPSETLEELLKPQTVHHFAPPSESKTATQERKQQPPQTGDSLENYQLLNLDRCFPPNAVA
ASREKLPFDPKQLNDSRKETNQSLPAFYGCSYYREQAAAAARNVTANQNNDTSGDSTNLP
VVYVPTGTNPATQQTSSERHQSVSSPQPSPVACFTSPNRQQPLQMTLPTLSPGCLRDILQ
SDDISDSFAISLKRKRCFDGINDDADDDVFSNSPPAFDFMQMQAKRSCFDAI
Nucleotide sequence
Length: 2,319
>Phfumi.CG.MTP2014.S70.g00816.01.t
ATGGCTTATTCAGAAGTGCAGTACCCGTCGCAGCATTGTGCTGTGAGGCCGCAACAGTTT
CAGTCTGACATGCAATACTACCAAGGCGTACCTAGTCGATTTCAGGCTGTGAATGAAAAC
AAAAGCTGGTATCCCAATGAGGACCACAATGCCAACAGCAATTTTCATCACGAGAACAAC
TACCAAAGACTATCGCCTCCTGGCCAAGCGTTGTCCACAATGTGGAATCCTATTAACCAG
GGGCAGTATCTTAATATGAACGTGTTTAATGGAAAGAGTGCTCCGCCCGCAAACAATGTA
AATAAATACGGGCAAAATGACGGTTACCGCCAGCGCATTAACAGCGCCGCCAGTGATGGT
TATGCAGCACCTTCAAGCAACCAGTGGATGTCAGCACAAAGCCCAAACATGTATTCTCCG
ACGAATCAGTTTAATTTTCCAAGATCTCGTCAAGGAAGCATGACCGATCAAGGGCAGTTG
ACACCTGACAACTATTACCACACTCAGCAAAACTACAACAACCAGTGTATGCCGCAACAC
ATGCCGTACAGAGCTACATCCACCCCAGGTAGTTGTGGCACCAACTCTCCACCCAACATG
TCCATAATGCCACCACAGCCAACCCCAACACAAATGCAACAACCTTCACAGGTACCAACT
GGGGAAGTTCCCATCCCAGGAAAGCGCGGAAGTGATTGGGAATTGGAATGCATGGGAGTT
GAAATGAAGTTGTCCAATGCAAATGTGTGGAAGAACTTCGACAACGTGGTTACTGAGATG
GTGATCAGCAAACATGGAAGGCGTATGTTTCCGGTGTTGGAATACGAACTGAACGGACTG
GATCCAAACAAGCTTTATAACGTGTTTCTTGACTTTGTTCTTGCAAACTGTTACGTATGG
AAATATGTTGACCAAGGCTGGCATCCAAATGGACTTGCTGCAAATGAAGAACCCGATTTT
CAACCTGGACAACGAGTTTATTTGCACCCCGATTCACCCGCACCCGGCGATGTATGGAAT
AAGAAAGGGGCGAGTTTTAACAAGATGAAGCTAAGCAACCACTACCATGAAAAAGAAAAG
ATTATTACACTGAGAACTCTTCATAAGTATCAACCTCGTCTCCACATTGTTGAGGTGGAT
CACGTCAATCCATCCATGCAAAGTAATCTGCGAACATTTGTACTTCCTAAAACTACTTTC
ATGACAGTTACCTTGTATCACGATACCGACGTCGCACAGCTTAAAATTAATCTGAATCCA
TTTGCAAGGTCATTCAGAGACAAATCATTGACCAAAAAACCTTCTGACGACAGCAACTCG
TCGAATTCGTCGTCAATGTCGCAATCTCTTTCCCCAATGACTTCGCCAGAAAATGTGGAA
AATTCGGTGCATGACGTAGGCGATAACGAACCTATTAATTTTGACGCAAATGAAATCGTA
AAAGTGGAAAACCCTGTTAATTCTGTTGACCTCGAAAAAGCAAAGCAGTTTCTTCACAAA
CAACTGAACGTTATGTCGCAGTTGGTTCGAACGAGCGAAGAGTTGGAAAGAAATTCGACT
CTTCAAAGCATCGGTTCAACATCTCAGACACAACTGACGGTTTCTAAACAAGGATCGTCT
AATCCGAGCGAAACATTAGAAGAACTTCTTAAACCTCAAACTGTTCATCATTTTGCCCCA
CCGTCAGAATCCAAAACTGCAACTCAGGAAAGAAAACAACAACCTCCACAAACTGGCGAC
TCATTGGAAAACTATCAACTCCTTAATCTTGACCGTTGTTTTCCACCCAACGCTGTCGCT
GCTTCAAGGGAGAAACTGCCTTTTGACCCCAAGCAGTTAAATGACTCCAGAAAAGAAACA
AATCAAAGTCTCCCTGCCTTTTATGGGTGCAGTTACTACAGGGAACAAGCTGCCGCTGCC
GCTCGGAATGTTACCGCAAATCAAAATAATGATACTAGTGGAGATTCAACCAACCTACCA
GTGGTCTACGTTCCAACTGGCACCAATCCAGCAACGCAACAAACCTCCTCGGAACGTCAT
CAATCAGTGTCATCACCACAACCATCACCAGTCGCATGTTTTACGTCACCAAATCGACAG
CAGCCATTGCAGATGACACTTCCTACTTTGTCGCCAGGATGCCTCCGCGATATTCTGCAA
AGCGATGATATTTCCGACTCCTTTGCCATTTCGCTTAAACGCAAACGCTGTTTCGATGGC
ATCAACGATGACGCAGATGATGACGTATTTAGCAACTCGCCACCGGCTTTCGATTTCATG
CAAATGCAAGCGAAGAGAAGTTGCTTTGATGCGATTTAG
| PANTHER |
TF_T-box (IPR001699) - T[197-699] 1.7E-69 |
| Gene3D |
T-box_sf (IPR036960) - T[238-433] 2.9E-62 |
| SMART |
TF_T-box (IPR001699) - T[239-432] 5.9E-66 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[240-427] 3.48E-61 |
| Pfam |
TF_T-box (IPR001699) - T[243-427] 6.3E-58 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[244-427] 58.638 |
| PRINTS |
TF_T-box (IPR001699) - T[257-281] 1.2E-30 - T[327-340] 1.2E-30 - T[344-353] 1.2E-30 - T[363-377] 1.2E-30 - T[398-411] 1.2E-30 - T[419-427] 1.2E-30 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| BRAC_HUMAN | 39.706 % | 161 | 4.43E-43 |
| TBX6_HUMAN | 35.065 % | 165 | 2.6E-44 |
| TBR1_HUMAN | 39.224 % | 170 | 1.7E-44 |