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TRANSCRIPT CARD

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  1. Transcript 'Boleac.CG.SB_v3.S555...' > 
  2. Transcript 'Cisavi.CG.ENS81.R19....' > 
  3. Transcript 'Cisavi.CG.ENS81.R1.2...' > 
  4. Transcript 'Boschl.CG.Botznik201...' > 
  5. Transcript 'Phfumi.CG.MTP2014.S6...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S6784.g07495.01.t

Possible name(s)

HTT

Gene model

Phfumi.CG.MTP2014.S6784.g07495

Location

S6784 [3,152 / 6,868]

Sequences

Amino acid sequence

Length: 392

>Phfumi.CG.MTP2014.S6784.g07495.01.p
MDKLIRSVNALKFHYGGLVAEEKNQRDTAFNPKERQTHINSIAESLTSPSLKTSSDLPGL
LTISIEILLQACTDDSADVRINADESLNKIIKCLHETAIGKILVELYKDIKKNLSSKSLS
IRRSASTCLHAIIVNSRKRDPVLLPLLHSILDILVQRHTDRSTVLGCMQTLRLIVPLLQV
DRKPSSSNNLDHQAMLVQIFESSIYYICHKDHTVVTSALELLEQLLKSFPLQFAGILSTL
FDAQSFVPSDIQATQDDSVSMATSSSSTSLTNLAAEEDQLLRENLASTITGSADSNLQIN
GAQPTQEAVGNQTVSQLGGETSENKILPEQSPTKNGSTDTSSITEVSVVPNDQEDSVLAL
RFSDFFMSSVVEKKTDPAVLPLHLLGLMLCQR

Nucleotide sequence

Length: 1,179

>Phfumi.CG.MTP2014.S6784.g07495.01.t
ATGGACAAACTCATTAGATCTGTCAATGCTTTGAAATTTCATTATGGTGGATTAGTTGCT
GAAGAGAAAAATCAAAGGGATACAGCCTTTAACCCAAAGGAACGACAAACCCATATCAAT
TCAATTGCTGAATCCTTAACATCTCCTTCTTTGAAAACAAGCTCAGACCTCCCTGGATTG
CTAACAATATCCATAGAAATCTTGCTACAAGCTTGTACTGATGACAGTGCAGATGTCAGA
ATAAATGCTGATGAGTCGCTGAACAAAATTATCAAATGCCTGCATGAAACTGCAATTGGG
AAAATTTTAGTTGAACTTTACAAGGACATTAAGAAGAATCTCTCATCCAAGTCTCTGAGT
ATTAGGCGATCAGCAAGCACTTGTTTACATGCCATCATTGTCAACTCTAGAAAGCGCGAT
CCCGTTCTTTTGCCCTTGTTGCATTCAATTTTAGACATACTCGTCCAGCGACACACAGAC
CGTAGCACAGTGCTTGGTTGTATGCAAACTCTTCGACTAATTGTTCCTCTTCTGCAAGTA
GACAGAAAACCATCTTCTTCAAACAACCTGGACCACCAGGCAATGCTTGTTCAAATATTT
GAAAGTTCCATTTACTACATATGCCACAAGGACCACACAGTTGTGACGTCAGCCCTCGAA
CTATTGGAGCAACTTCTCAAATCTTTCCCTCTCCAATTTGCTGGCATCCTCTCAACTTTG
TTTGATGCTCAGTCTTTTGTTCCAAGCGATATCCAGGCAACACAAGATGACAGTGTATCC
ATGGCAACGTCCTCTTCATCAACAAGTCTCACCAACTTAGCAGCAGAAGAAGATCAGTTG
CTTCGTGAAAACCTTGCATCAACTATAACCGGCAGTGCAGATTCTAATTTACAAATAAAC
GGTGCACAACCAACTCAAGAAGCAGTCGGCAACCAAACTGTATCACAGCTGGGTGGCGAA
ACATCAGAAAACAAAATCCTACCTGAACAATCACCAACCAAGAATGGCTCAACTGATACC
AGCTCCATTACTGAAGTGTCTGTTGTTCCCAATGATCAAGAGGACTCGGTATTGGCTCTT
CGATTTTCTGATTTTTTTATGTCCAGTGTCGTTGAGAAAAAAACTGACCCTGCAGTTTTG
CCATTGCACCTCCTGGGGCTTATGCTTTGCCAAAGGTGA

InterProScan

PANTHER
Huntingtin_fam (IPR028426) - T[1-119] 3.7E-47 - T[113-276] 3.7E-47
SUPERFAMILY
ARM-type_fold (IPR016024) - T[40-246] 5.76E-16
Gene3D
ARM-like (IPR011989) - T[66-261] 3.5E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value