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TRANSCRIPT CARD

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  1. Clone 'ma321k11' > 
  2. Clone 'cien63478' > 
  3. Clone 'AHC0AAA135YI05' > 
  4. Region 'REG00001511' > 
  5. Transcript 'Phfumi.CG.MTP2014.S6...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S61.g00739.01.t

Possible name(s)

SOX11; SOX12; SOX4

Gene model

Phfumi.CG.MTP2014.S61.g00739

Location

S61 [8,125 / 9,622]

Sequences

Amino acid sequence

Length: 499

>Phfumi.CG.MTP2014.S61.g00739.01.p
MLHHASASTSSAQSMSTVYMSLDSRKRAVKPPGSPDSGMGYDSDLDNDEEVITNRRLSQH
KAMSNLHASSPSPTLECINCPEMQDGGHDVFDGNVAKENSVAPVVVKREVETTYTNDSKM
AEILAELNNLPDTKIELPPPSISSQKKLAARPDHVKRPMNAFMIWSQIQRRKIMEETPDV
HNAEISRNLGKLWRELPEPEKLPFMIEAERLRLQHMRDHPDYKYKPKKKAKAAPGKKAAD
EKDYVKIECAKIPAESKQAAARASPNAKRARKRKLTSNQPKVTPSPTNIPIETQSVSKAV
FNPIQVALTPSSDPAQQGVGATALDNPTTVTIKVEPTGASLSTLTSPSVPRKRARTNSES
IVKREDQSSPKIVKGTLIQGEGNRQYILVSGASDLRPNVQAISSVVSPSSRPGSAPQQAH
IQQDKGPVVCYAQGFVPIAKVHENSISIVNGCMQSSSSNSSSNNATPTKDTDAISRNEAK
IMSEVLGSNCFQQHFKVSI

Nucleotide sequence

Length: 1,497

>Phfumi.CG.MTP2014.S61.g00739.01.t
ATGTTACATCACGCAAGCGCCAGCACATCGAGCGCCCAATCGATGTCGACCGTCTACATG
AGTCTGGATTCCCGCAAGCGCGCGGTCAAGCCGCCTGGGTCGCCCGACTCGGGAATGGGC
TATGACAGCGACTTAGACAACGACGAGGAAGTGATCACAAACCGAAGGCTGAGTCAACAC
AAGGCTATGAGTAATCTACACGCGTCTTCCCCGTCGCCTACGCTGGAGTGTATCAACTGC
CCCGAGATGCAAGATGGCGGCCACGATGTGTTCGATGGGAACGTGGCCAAGGAAAACAGC
GTTGCACCTGTGGTGGTAAAGCGCGAGGTCGAGACGACCTACACTAATGACAGCAAGATG
GCTGAGATATTGGCTGAGCTTAACAACTTGCCCGACACCAAGATCGAGCTTCCACCGCCA
TCAATCAGCAGCCAGAAAAAATTGGCAGCACGTCCAGATCATGTCAAGCGCCCAATGAAC
GCTTTCATGATCTGGTCGCAGATTCAGCGACGCAAGATTATGGAGGAAACACCAGACGTC
CACAATGCTGAGATCAGCCGAAATTTGGGCAAGCTTTGGCGAGAACTGCCCGAGCCTGAG
AAACTGCCATTTATGATAGAGGCCGAACGTCTTCGCCTCCAACACATGCGGGATCACCCC
GACTACAAGTACAAGCCGAAGAAGAAGGCTAAAGCAGCTCCAGGTAAAAAAGCTGCCGAT
GAGAAGGATTACGTAAAAATTGAATGCGCTAAGATTCCAGCGGAATCTAAGCAAGCTGCC
GCGCGAGCCAGCCCCAATGCAAAACGCGCACGCAAACGTAAACTTACCTCAAATCAACCC
AAGGTCACACCATCTCCCACCAACATTCCCATTGAAACTCAGTCCGTGTCAAAAGCCGTG
TTCAATCCGATTCAGGTCGCCCTGACGCCGAGTAGCGATCCGGCGCAGCAGGGCGTTGGT
GCTACCGCTTTGGACAATCCAACGACCGTCACGATCAAAGTGGAGCCGACTGGAGCCAGT
CTCTCGACCTTGACCTCTCCCTCCGTTCCACGCAAACGCGCACGCACGAACTCCGAGTCG
ATTGTAAAACGTGAAGACCAGTCAAGCCCGAAAATCGTTAAGGGCACTTTAATTCAGGGT
GAGGGCAACCGACAATATATCCTTGTGTCTGGAGCCTCGGACTTACGACCGAACGTACAA
GCAATCAGCAGCGTCGTGTCCCCGTCCAGCCGGCCTGGAAGTGCGCCTCAGCAGGCCCAC
ATTCAACAGGACAAGGGACCGGTTGTCTGCTACGCGCAGGGATTCGTTCCAATCGCCAAA
GTCCACGAGAACAGCATCAGTATTGTGAACGGTTGCATGCAATCATCCAGCAGCAACAGC
AGTAGCAACAACGCGACGCCCACCAAGGACACGGACGCTATCAGTAGGAACGAGGCGAAA
ATTATGTCGGAAGTCCTGGGAAGCAACTGTTTCCAGCAACATTTTAAGGTAAGCATT

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[138-224] 2.09E-27
PANTHER
SOX-11 (IPR029551) - T[153-300] 1.6E-43
Gene3D
HMG_box_dom_sf (IPR036910) - T[153-230] 2.1E-26
SMART
HMG_box_dom (IPR009071) - T[154-224] 1.1E-24
ProSiteProfiles
HMG_box_dom (IPR009071) - T[155-223] 21.481
Pfam
HMG_box_dom (IPR009071) - T[155-223] 1.2E-23

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX11_HUMAN 66.667 % 134 1.37E-34
SOX4_HUMAN 67.5 % 133 6.18E-34
SOX12_HUMAN 66.265 % 130 4.78E-34