- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'Phfumi.CG.MTP2014.S4...' >
- Transcript 'Cisavi.CG.ENS81.R27....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phfumi.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S5930.g07160.01.t
Possible name(s)
LRP4; LRP6
Gene model
Location
S5930 [2,673 / 10,739]
Amino acid sequence
Length: 1,047
>Phfumi.CG.MTP2014.S5930.g07160.01.p
NPVTDSRIVHRVYWTEAGRSHQAIEACDLDGGNRRKIIEHNLPHPFGITLDETKIYWTDW
DSKSINSADKETGENRQVLREHLEQLMDIRYYHQSRPQSPNPCSQRNGGCSHLCLLAPRG
SAPLSIGDSPFSCACPTGLSLGPDRKECNTKMNKFLAIARRTDIRVISLDVAYSADMKLP
IDAYMANVADVDVDPKDGYIYWSDNGSREITRSSLADPSKSEVVIGSGLDMVDGIAVDHV
GRLLYWTDDGRDVISVSSLDGKMRRIVINDDVGSPRAIAIHYELGYMYWTDWGNSPSAKI
ERAGLDGTNRSVVISDDLIWPNAVVIDQERGLLIWGDAQTERIECSNLDGSNRTILYAQA
SHPYSLAILDGVIYWNDWGTRNINQMALGNTSSFRVVRKNMPHMMGMSAVSMNVTGNNRC
GSNNGGCSHFCLRSPTSDIGYKCACPTGVRLQKDGRTCTDLPSQYLLLATRLSIRRVSLE
ADFDMYEELPVGELENTIAVDYHYGRQLLFFTDVYLDVIKRSHLNGSNVQTIISHGLKTM
DGVAVDWVADNLFWTDAVLNTISVARLDGSSKRVIISDNLDEPRALCVHPSRGLLFWTDW
GGKARIEKAYMDGSGRKVLIRKNLKWPNGLTIDYKNSRIYWVDAHDDLRRIETCDFNGRK
RRIVVPSVPHGFSVTYLDDTLYWTDWETKSLHSTKYPFNTGKRNTIIRGLEGLMDIKAVS
ASRQKGTSPCDVRTGYGACTHLCLMKGSVEYTCACPSPIDPDDGDDGSILDGLGEGDFPT
DHPDALLRNCSEVPLPPTVAPSTTRNVVEVTSEEVVTSPEVATSPDVAGAGGTVAPQSHG
LLRLLLASLGAAIVVFLLFAGCGFLFWKRMKKRTVKQTDDGVRFQYLLDGQSSHSILNGS
CTPRSDVSHTPSDVSDRYDDTTTQYSRVSTLDAQRKAQPVSPRRVGITVPPNNLQEDEAT
PSDTPLLYDAPADSCDDVTTDYVTPEVQARSRINVKHRLLRHLQEKQPKSSVSTICTMLS
EDDRKVSGSNPVDDESDSLQDHLTSKC
Nucleotide sequence
Length: 3,144
>Phfumi.CG.MTP2014.S5930.g07160.01.t
AATCCTGTAACCGACTCACGAATTGTACACAGGGTCTACTGGACGGAAGCAGGCCGTTCC
CATCAAGCGATCGAAGCTTGTGATTTGGATGGCGGGAACAGGAGGAAGATAATTGAGCAC
AACCTCCCTCATCCGTTCGGGATCACTCTGGATGAAACCAAGATTTATTGGACCGACTGG
GATTCGAAGTCGATTAACAGCGCGGATAAAGAGACAGGGGAAAACCGGCAGGTGCTTCGT
GAACACTTGGAACAACTCATGGATATAAGATATTACCACCAATCTCGGCCCCAATCACCC
AACCCCTGCTCCCAACGAAACGGGGGCTGCTCCCACCTCTGTCTGCTTGCCCCCAGGGGC
AGTGCACCCCTAAGTATTGGGGATTCCCCCTTCTCGTGCGCTTGCCCGACGGGGCTGTCC
CTGGGGCCGGACAGAAAGGAATGCAACACCAAGATGAACAAATTCCTGGCAATCGCTCGC
AGAACCGACATCCGGGTGATTTCGCTTGACGTCGCTTACTCAGCAGATATGAAATTGCCG
ATCGACGCTTACATGGCAAATGTTGCTGACGTCGACGTCGACCCGAAAGACGGTTACATC
TATTGGTCGGACAACGGCTCGCGGGAAATTACTCGAAGCTCATTGGCTGATCCGTCCAAG
AGCGAGGTTGTGATTGGTTCAGGTCTCGACATGGTTGACGGAATCGCGGTTGATCACGTG
GGCAGATTGTTATATTGGACAGACGATGGTCGTGACGTCATATCGGTGTCGTCATTGGAC
GGGAAAATGCGACGAATTGTGATCAACGATGACGTAGGCTCGCCGAGGGCCATAGCGATA
CATTACGAGCTCGGCTATATGTACTGGACCGACTGGGGGAATTCCCCTAGTGCGAAAATC
GAGCGAGCAGGTTTGGACGGAACGAATCGATCTGTCGTCATATCTGATGACCTCATCTGG
CCCAACGCTGTCGTCATCGATCAGGAACGGGGTCTCCTTATTTGGGGTGACGCACAAACT
GAGCGGATCGAGTGTTCGAATCTCGACGGGAGCAACCGAACAATTCTTTACGCCCAAGCG
TCGCATCCCTACTCACTCGCTATACTCGATGGCGTCATCTACTGGAACGACTGGGGAACG
CGCAACATCAACCAGATGGCGCTAGGCAACACCAGCAGTTTCCGGGTCGTGAGGAAAAAC
ATGCCGCATATGATGGGAATGAGCGCAGTGTCCATGAATGTCACCGGGAATAATAGATGC
GGTTCGAACAATGGCGGTTGCAGCCACTTCTGCTTGCGCAGCCCAACATCGGACATCGGC
TACAAATGCGCTTGTCCCACGGGAGTTCGACTGCAGAAAGACGGCCGAACTTGTACCGAC
CTTCCGAGCCAATATCTGCTGCTCGCCACTCGCCTCTCAATCCGCAGGGTGTCGCTGGAG
GCTGACTTTGACATGTATGAAGAACTTCCGGTAGGGGAGCTAGAGAACACCATCGCTGTG
GATTACCATTATGGCAGACAGCTTCTCTTCTTTACTGACGTATACCTTGACGTCATCAAG
CGGTCACACCTGAACGGTTCCAACGTGCAGACGATAATCTCACACGGATTGAAGACAATG
GATGGTGTTGCTGTGGATTGGGTAGCGGACAATCTCTTCTGGACCGATGCTGTGCTTAAT
ACGATCTCTGTGGCGCGGCTGGATGGCAGTAGCAAGCGTGTCATCATCAGTGATAACTTG
GACGAACCACGTGCTCTGTGCGTTCATCCGTCACGTGGCCTCTTGTTCTGGACCGACTGG
GGAGGAAAAGCGAGAATCGAAAAAGCCTACATGGATGGGTCGGGAAGGAAGGTTCTTATC
CGCAAAAACCTGAAATGGCCGAACGGTTTGACGATTGATTACAAGAATTCTCGAATTTAC
TGGGTGGATGCGCACGACGATCTGAGAAGAATTGAAACTTGTGACTTTAACGGAAGAAAG
CGTCGGATTGTTGTTCCATCTGTTCCTCATGGCTTCTCTGTCACCTATCTTGATGATACT
TTGTATTGGACTGACTGGGAGACAAAGAGTTTGCATTCCACCAAATATCCATTCAACACT
GGCAAAAGAAACACAATAATCCGTGGCTTGGAAGGTCTCATGGATATTAAGGCTGTTTCA
GCTTCGAGACAGAAGGGTACGAGCCCGTGTGACGTCAGAACCGGTTATGGGGCGTGTACC
CACCTTTGTTTGATGAAGGGGTCAGTGGAGTACACGTGCGCCTGTCCCAGCCCCATTGAC
CCCGACGATGGGGACGATGGGTCCATCCTCGACGGCCTGGGTGAAGGGGATTTCCCCACC
GATCACCCCGACGCGTTGCTACGCAACTGCAGCGAAGTTCCCCTCCCACCCACCGTCGCA
CCTTCAACCACGCGTAACGTCGTTGAAGTGACGTCAGAGGAGGTTGTGACGTCACCGGAA
GTTGCCACGTCACCCGACGTCGCGGGAGCAGGTGGCACCGTTGCACCGCAGAGCCACGGA
TTGCTTCGTCTCCTGCTCGCGTCGCTAGGTGCCGCTATTGTGGTGTTCCTTTTGTTCGCC
GGATGCGGATTTCTATTCTGGAAGCGGATGAAGAAGCGGACGGTGAAGCAAACAGATGAT
GGGGTGCGTTTCCAGTATCTTCTCGACGGTCAAAGCAGCCACAGCATCCTCAACGGCTCC
TGTACCCCTCGCTCTGACGTATCACACACCCCCTCTGACGTCAGCGACCGTTATGACGAC
ACAACGACGCAATACAGTCGCGTTTCGACGCTGGACGCGCAACGGAAAGCTCAACCAGTT
TCGCCTCGTCGAGTCGGAATCACAGTCCCCCCGAACAACCTGCAAGAGGATGAAGCGACA
CCTAGCGATACCCCCTTGCTCTACGATGCGCCCGCCGATAGCTGTGATGACGTCACTACC
GATTACGTAACCCCGGAGGTGCAGGCGAGGAGCAGAATTAATGTAAAACACCGGTTGTTG
CGCCACCTACAGGAGAAACAGCCGAAGTCGAGCGTGTCCACGATTTGCACGATGCTGTCC
GAGGACGATCGAAAGGTTTCGGGTTCGAACCCCGTCGACGACGAATCGGATTCCTTGCAA
GACCACCTCACCAGCAAGTGTTGA
| SMART |
LDLR_classB_rpt (IPR000033) - T[1-34] 9.1 - T[35-75] 5.7E-5 - T[178-220] 0.095 - T[222-264] 2.4E-13 - T[265-310] 1.4E-15 - T[311-353] 3.7E-9 - T[354-393] 43.0 - T[487-529] 2.8E-6 - T[530-572] 8.1E-13 - T[573-616] 2.9E-12 - T[617-661] 2.1E-11 - T[662-703] 14.0 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[4-147] 5.4E-43 - T[148-459] 3.1E-103 - T[460-757] 1.1E-103 |
| PANTHER |
LRP4 (IPR030799) - T[10-780] 1.1E-291 |
| ProSiteProfiles |
LDLR_classB_rpt (IPR000033) - T[10-54] 14.519 - T[55-95] 7.047 - T[198-241] 12.128 - T[242-284] 14.983 - T[285-330] 15.331 - T[331-372] 10.806 - T[373-413] 5.956 - T[507-549] 12.128 - T[550-592] 15.4 - T[593-636] 16.236 - T[637-665] 9.762 - T[679-696] 6.35 |
| Pfam |
LDLR_classB_rpt (IPR000033) - T[11-52] 3.0E-7 - T[242-282] 4.5E-10 - T[285-327] 2.2E-12 - T[508-547] 1.4E-5 - T[551-590] 5.5E-11 - T[593-634] 1.9E-11 |
| SMART |
EGF-like_dom (IPR000742) - T[102-149] 2.4 - T[419-459] 0.17 - T[729-791] 100.0 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LRP4_HUMAN | 49.412 % | 763 | 0 |
| LRP6_HUMAN | 40.16 % | 577 | 0 |
| LRP5_HUMAN | 39.974 % | 555 | 1.79E-175 |