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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S2...' > 
  2. Clone 'AHC0AAA135YG24' > 
  3. Transcript 'Phfumi.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S535.g02266.03.t

Possible name(s)

SOX13; SOX5; SOX6

Gene model

Phfumi.CG.MTP2014.S535.g02266

Location

S535 [25,614 / 29,393]

Sequences

Amino acid sequence

Length: 201

>Phfumi.CG.MTP2014.S535.g02266.03.p
NVYCSGLTTRVPSSTAKSPKRKIMETNYYSPNRHEALNNDAVCSSQEDVPMNLTRKSTST
PSTQFYKNNAMTAGLMTTAKIPKTDGISSPKVLQSHSAGFLDQSDGICSYSGKNSEGAKW
KEMSTIEKQPYYEEQARLSKLHLEKYPDYKYKPRPKRTCIVNGKKLRISEYKALMRMRRN
GIEAPNDAGLTTTNHPYGVQM

Nucleotide sequence

Length: 603

>Phfumi.CG.MTP2014.S535.g02266.03.t
AACGTGTATTGTTCAGGTCTTACGACCCGCGTGCCATCTTCTACTGCCAAATCCCCAAAG
AGAAAGATCATGGAAACCAATTATTATTCTCCGAATAGACATGAGGCTTTAAACAATGAC
GCCGTTTGTTCATCTCAAGAGGATGTTCCAATGAATTTGACAAGAAAATCTACATCAACT
CCATCTACCCAGTTCTACAAAAATAACGCAATGACAGCAGGTTTGATGACCACAGCCAAG
ATCCCCAAAACTGATGGGATATCATCTCCTAAGGTTTTGCAATCACACAGTGCAGGCTTC
CTTGATCAATCAGATGGAATTTGTAGTTACAGTGGGAAAAATTCTGAAGGGGCGAAATGG
AAGGAAATGTCAACTATAGAGAAACAGCCATATTATGAAGAGCAAGCAAGACTGAGCAAG
CTGCATTTAGAAAAATATCCCGACTACAAATACAAACCTCGGCCCAAAAGAACTTGCATT
GTTAATGGAAAAAAACTAAGAATTTCGGAATACAAGGCCCTGATGCGAATGAGACGAAAC
GGCATCGAGGCCCCGAATGACGCAGGTTTGACCACAACAAACCATCCTTACGGAGTTCAA
ATG

InterProScan

Gene3D
HMG_box_dom_sf (IPR036910) - T[96-160] 7.2E-11
SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[117-172] 6.41E-10
ProSiteProfiles
HMG_box_dom (IPR009071) - T[117-150] 9.109

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX5_HUMAN 80.952 % 119 2.87E-31
SOX6_HUMAN 82.54 % 118 7.02E-31
SOX13_HUMAN 78.125 % 115 5.33E-30