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TRANSCRIPT CARD

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  1. Transcript 'Cisavi.CG.ENS81.R19....' > 
  2. Transcript 'Boleac.CG.SB_v3.S6.g...' > 
  3. Transcript 'Phmamm.CG.MTP2014.S2...' > 
  4. Molecular Tool 'FoxF(TVC)>Wee1' > 
  5. Transcript 'Phfumi.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S535.g02266.01.t

Possible name(s)

SOX13; SOX5; SOX6

Gene model

Phfumi.CG.MTP2014.S535.g02266

Location

S535 [24,478 / 27,800]

Sequences

Amino acid sequence

Length: 193

>Phfumi.CG.MTP2014.S535.g02266.01.p
VGLMTTAKIPKTDGISSPKVLQSHSAGFLDQSDGICSYSGKNSEDMTKSNRGHIKRPMNA
FMVWAKDERRKILQAFPDMHNSNISKILGAKWKEMSTIEKQPYYEEQARLSKLHLEKYPD
YKYKPRPKRTCIVNGKKLRISEYKALMRMRRNGIEAPNDAGLTTTNHPYGVQMLSSMKPI
PTCDRGAPRIKER

Nucleotide sequence

Length: 582

>Phfumi.CG.MTP2014.S535.g02266.01.t
GTAGGTTTGATGACCACAGCCAAGATCCCCAAAACTGATGGGATATCATCTCCTAAGGTT
TTGCAATCACACAGTGCAGGCTTCCTTGATCAATCAGATGGAATTTGTAGTTACAGTGGG
AAAAATTCTGAAGATATGACGAAAAGCAATCGAGGCCACATAAAGCGTCCAATGAATGCG
TTTATGGTCTGGGCCAAAGACGAAAGAAGAAAGATATTGCAGGCATTTCCAGATATGCAC
AACTCAAACATCAGTAAAATTTTAGGGGCGAAATGGAAGGAAATGTCAACTATAGAGAAA
CAGCCATATTATGAAGAGCAAGCAAGACTGAGCAAGCTGCATTTAGAAAAATATCCCGAC
TACAAATACAAACCTCGGCCCAAAAGAACTTGCATTGTTAATGGAAAAAAACTAAGAATT
TCGGAATACAAGGCCCTGATGCGAATGAGACGAAACGGCATCGAGGCCCCGAATGACGCA
GGTTTGACCACAACAAACCATCCTTACGGAGTTCAAATGCTCTCGTCAATGAAGCCCATT
CCGACTTGCGACCGAGGTGCTCCAAGAATCAAAGAAAGATGA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[40-126] 7.33E-27
Gene3D
HMG_box_dom_sf (IPR036910) - T[51-130] 1.1E-28
SMART
HMG_box_dom (IPR009071) - T[53-123] 1.8E-25
Pfam
HMG_box_dom (IPR009071) - T[54-122] 3.2E-23
ProSiteProfiles
HMG_box_dom (IPR009071) - T[54-122] 20.527

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX5_HUMAN 86.408 % 199 6.4E-60
SOX6_HUMAN 86.408 % 195 2.17E-58
SOX13_HUMAN 83.495 % 191 6.84E-58