Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Phfumi.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S4140.g06189.01.t

Possible name(s)

VPS11

Location

S4140 [3,815 / 13,488]

Sequences

Amino acid sequence

Length: 566

>Phfumi.CG.MTP2014.S4140.g06189.01.p
IGINPVIKVWNLDKKDKLGNPFCCRVQTTIPNTNVPSEVTDFAVHENLTMMAVSFAQGSV
VLYKGDIAKDRITNKTMHLTTDVSDPITGLSFYGVGKNIHLFATTEKMLFTFNLQEKSPK
KNVLDRRGCPPRCSMSSDAILDDQFILTATDAVYLYHPDSVGSCFVFEGEKILAKWCSGY
LVLVYKDKAKGSIPTTSTMRLLDKNVVTIYDMKQKLIAYSAPLPGVQEVLHEWGSIYILG
ADNSLVCLQEIDIHQKLEMLFKKNLYSLAVNLAKSQNLGEEGLVEIFTQYGDHLYSKGDF
DNAITQYIRTIGHLEPSYIIRKFLDAQRIHNLASYLQALHEKGLANEDHTTLLLNCFTKL
KDVENLNKFIMVVYLKIQLEDTHQYEKALAYIKKLPFKESSDDADRGPVSKSNGEEFIHI
FVNTPDMLVKFLEHLIQADSKPSEAVFNTLLELYLHKMNQTDNAKKKVKIEETTLKLLKD
FSSKSLSDQALVLCQMHNFRPGILYLYEAQGLYQQILRYHMDHEAHGLIVETCRRHGDRD
VTLWQHALTYFAQQRDSHHNVTITSF

Nucleotide sequence

Length: 2,031

>Phfumi.CG.MTP2014.S4140.g06189.01.t
ATTGGAATAAATCCTGTAATTAAAGTTTGGAATCTGGACAAGAAAGACAAACTTGGAAAT
CCATTTTGCTGCAGAGTGCAGACTACAATCCCCAATACCAATGTACCCAGTGAGGTAACA
GACTTTGCTGTGCATGAAAACCTCACAATGATGGCTGTATCATTTGCCCAAGGATCAGTT
GTGCTGTACAAAGGAGACATTGCCAAAGACAGAATCACCAACAAAACTATGCATTTGACA
ACTGATGTGTCAGACCCAATTACCGGTTTGAGTTTTTATGGAGTCGGCAAAAACATCCAT
CTTTTTGCAACAACAGAAAAGATGCTGTTTACATTCAACTTGCAAGAAAAATCACCAAAA
AAGAATGTGCTTGACCGAAGAGGTTGCCCACCTCGCTGCAGCATGAGCTCTGATGCCATT
CTTGATGATCAGTTTATTCTCACTGCAACTGATGCAGTATACCTTTACCACCCAGATTCA
GTTGGGTCATGTTTTGTCTTTGAAGGGGAAAAGATTTTGGCCAAGTGGTGCAGTGGTTAC
CTAGTGTTGGTTTACAAAGACAAAGCAAAGGGCTCAATTCCAACTACCAGCACAATGCGG
CTCCTTGATAAAAATGTGGTTACTATTTATGACATGAAACAAAAACTTATAGCCTATTCT
GCTCCTCTACCTGGAGTGCAGGAAGTTTTGCATGAGTGGGGATCAATTTACATTCTCGGT
GCAGACAACAGTCTCGTTTGTCTGCAGGAAATTGACATACATCAAAAGTTAGAGATGCTG
TTTAAGAAGAACCTGTATTCCCTAGCTGTAAACCTGGCCAAGAGTCAAAACCTTGGAGAA
GAGGGTCTGGTTGAGATTTTTACCCAGTATGGAGACCATCTGTATAGCAAGGGAGATTTT
GACAATGCTATCACACAATACATCAGGACAATTGGGCATCTAGAGCCTTCATATATCATC
AGAAAGTTTTTGGATGCCCAGAGGATTCACAACTTGGCCTCCTACTTACAAGCTTTGCAT
GAGAAAGGGCTGGCCAATGAGGATCATACCACGTTGTTGCTCAACTGCTTCACAAAGCTG
AAAGACGTTGAAAATCTAAATAAGTTCATCATGGTAGTGTATTTAAAAATTCAATTGGAG
GACACTCACCAATATGAAAAAGCCTTGGCATACATCAAAAAGCTTCCATTTAAAGAGAGT
AGTGACGACGCCGATCGTGGTCCAGTATCCAAATCAAACGGTGAAGAGTTTATTCACATA
TTCGTCAACACACCGGATATGCTTGTAAAGTTCCTCGAGCATCTAATACAGGCTGATAGC
AAACCATCAGAAGCGGTATTCAATACTTTGCTGGAGCTGTATCTGCACAAGATGAACCAG
ACCGACAATGCAAAGAAGAAGGTTAAAATTGAGGAGACAACACTGAAATTACTCAAGGAC
TTTTCTTCCAAGAGTCTCTCCGACCAAGCCCTAGTACTTTGTCAGATGCACAACTTCAGG
CCTGGAATTCTCTACCTTTATGAAGCGCAGGGCCTCTACCAGCAGATACTGCGCTACCAC
ATGGACCACGAGGCGCACGGCCTTATTGTTGAAACCTGCCGTCGCCATGGAGATCGTGAC
GTCACCCTGTGGCAACACGCTCTGACGTATTTTGCTCAGCAACGAGACAGTCATCACAAC
GTAACCATCACGTCATTTTAGGACTACATCCTGCGCCGTATACGCCAGGAAGCGGATGAG
ATCAAGAAATACGAACGGTCGATTGACGAGCACAGGGAAGCAACAGAAAAAATGAAGAAA
AACATAGAAGCGCTCGAAACAAGTTGCTTCGAGAGTTATGCAGAGAATGACGATGAGTGT
CCAGTGTGTGCTGGACCCAACCGGAAGATCATGGAGTCGCTTAAAGAGCAGGAACAGGCG
CTCTCCAGCAGCTTGGCATTAAACGAACAATTTCTCTCCCAGCTGAAAAGGTCAAGCGAC
GGCTTCTCGGTGATTGCCGACTTTTTTTCCAAAGGAGTCTTCAATAAGGTA

InterProScan

PANTHER
VPS11 (IPR016528) - T[3-559] 1.4E-174
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[4-185] 4.89E-8
ProSiteProfiles
Clathrin_H-chain/VPS_repeat (IPR000547) - T[307-560] 12.92

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VPS11_HUMAN 43.561 % 517 3.43E-174