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TRANSCRIPT CARD

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  1. Clone 'CCAO16123' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  3. Transcript 'Phfumi.CG.MTP2014.S3...' > 
  4. Transcript 'Phfumi.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S340.g01794.02.t

Possible name(s)

SDC1; SDC2; SDC4

Gene model

Phfumi.CG.MTP2014.S340.g01794

Location

S340 [27,159 / 29,010]

Sequences

Amino acid sequence

Length: 179

>Phfumi.CG.MTP2014.S340.g01794.02.p
MMRRSFFLIGLILVIASSQVQCGEDNWEYEVEGSASVPGDDEDMMDGSGSGDTETENDRT
KLRGIFPENEPEVDGGTSTTIATTTETSETNDEEIIVEEDDFDVKDPTAVNSASIFQSTH
FVIALIVGGCVGLLFAICVIMLLAYRMRKKDEGSYALDEQKKPASPSAYQYTQGQEYYA

Nucleotide sequence

Length: 540

>Phfumi.CG.MTP2014.S340.g01794.02.t
ATGATGCGGAGAAGTTTCTTCCTGATTGGATTGATTTTGGTTATTGCCTCATCCCAGGTC
CAGTGTGGAGAGGACAATTGGGAATATGAGGTGGAAGGCTCTGCCTCGGTTCCAGGGGAT
GATGAAGACATGATGGATGGGTCAGGTTCAGGAGACACTGAAACTGAAAATGACCGCACT
AAACTTAGAGGAATCTTTCCGGAGAACGAACCAGAAGTAGATGGAGGTACATCAACAACT
ATTGCCACAACCACTGAAACTAGTGAGACAAACGATGAGGAGATTATAGTAGAAGAAGAT
GATTTTGATGTTAAAGACCCAACAGCTGTAAATTCTGCATCCATATTCCAAAGTACTCAT
TTTGTGATTGCCCTGATTGTTGGTGGATGTGTTGGATTACTGTTTGCAATCTGCGTCATA
ATGTTACTGGCATACAGAATGAGAAAGAAAGATGAGGGTAGCTATGCTCTTGATGAGCAA
AAGAAACCAGCCTCACCCTCCGCATATCAGTATACTCAAGGCCAGGAATATTATGCTTAA

InterProScan

PANTHER
Syndecan (IPR001050) - T[85-179] 9.7E-36
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[114-176] 4.2E-24
ProSitePatterns
Syndecan_CS (IPR030479) - T[145-155] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SDC4_HUMAN 35.714 % 75.5 2.29E-17
SDC2_HUMAN 36.275 % 75.1 4.31E-17