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TRANSCRIPT CARD

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  1. Clone 'CCAO16123' > 
  2. Transcript 'Phmamm.CG.MTP2014.S1...' > 
  3. Transcript 'Phfumi.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S340.g01794.01.t

Possible name(s)

SDC1; SDC2; SDC4

Gene model

Phfumi.CG.MTP2014.S340.g01794

Location

S340 [27,049 / 29,010]

Sequences

Amino acid sequence

Length: 219

>Phfumi.CG.MTP2014.S340.g01794.01.p
MMRRSFFLIGLILVIASSQVQCGEDNWEYEVEGSASVPGDDEDMMDGSGSGSSITFDGKY
DDEMILFTNLSNSSSTTYTFVPTTEITMLKGDTETENDRTKLRGIFPENEPEVDGGTSTT
IATTTETSETNDEEIIVEEDDFDVKDPTAVNSASIFQSTHFVIALIVGGCVGLLFAICVI
MLLAYRMRKKDEGSYALDEQKKPASPSAYQYTQGQEYYA

Nucleotide sequence

Length: 770

>Phfumi.CG.MTP2014.S340.g01794.01.t
TTAATTTGTGCAAGAGTGAAGGCTGTTTTTTCTGTTGAAAGATTTGTTTTCTGTGTGTTC
TGTTTTTTTGACAATATCAGTGGGCATTGGATAAGGATTATTCAAAATTTATGATGCGGA
GAAGTTTCTTCCTGATTGGATTGATTTTGGTTATTGCCTCATCCCAGGTCCAGTGTGGAG
AGGACAATTGGGAATATGAGGTGGAAGGCTCTGCCTCGGTTCCAGGGGATGATGAAGACA
TGATGGATGGGTCAGGTTCAGGTTCTTCAATTACTTTTGATGGAAAATATGATGATGAAA
TGATTCTGTTCACTAACCTCAGTAATTCTTCTTCCACAACTTACACTTTTGTCCCAACAA
CAGAAATAACTATGCTAAAAGGAGACACTGAAACTGAAAATGACCGCACTAAACTTAGAG
GAATCTTTCCGGAGAACGAACCAGAAGTAGATGGAGGTACATCAACAACTATTGCCACAA
CCACTGAAACTAGTGAGACAAACGATGAGGAGATTATAGTAGAAGAAGATGATTTTGATG
TTAAAGACCCAACAGCTGTAAATTCTGCATCCATATTCCAAAGTACTCATTTTGTGATTG
CCCTGATTGTTGGTGGATGTGTTGGATTACTGTTTGCAATCTGCGTCATAATGTTACTGG
CATACAGAATGAGAAAGAAAGATGAGGGTAGCTATGCTCTTGATGAGCAAAAGAAACCAG
CCTCACCCTCCGCATATCAGTATACTCAAGGCCAGGAATATTATGCTTAA

InterProScan

PANTHER
Syndecan (IPR001050) - T[14-219] 1.3E-36
Pfam
Syndecan/Neurexin_dom (IPR027789) - T[154-216] 6.3E-24
ProSitePatterns
Syndecan_CS (IPR030479) - T[185-195] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value