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TRANSCRIPT CARD

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  1. Clone 'AL669160' > 
  2. Transcript 'KH2012:KH.C14.267.v1...' > 
  3. Transcript 'Moocul.CG.ELv1_2.S96...' > 
  4. Transcript 'KH2012:KH.L37.33.v1....' > 
  5. Transcript 'Phfumi.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S3241.g05561.02.t

Possible name(s)

GFAP; PRPH; VIM

Gene model

Phfumi.CG.MTP2014.S3241.g05561

Location

S3241 [889 / 10,508]

Sequences

Amino acid sequence

Length: 453

>Phfumi.CG.MTP2014.S3241.g05561.02.p
MSGKQGRSSYRNTFGNQTAYSTAGSKLFSKSGFASEEPITSKRVSYSYSSSSSGGGGMGS
GMGGGVASFDSDFSRLKLNEKEVLSGINNRFANYIEKVRYLEEQNQILEEKIRQAGAKKQ
VELGPDKLEKLRRLRAQVDEATLAKVRSEITRDNLRGEASELKWKLDHEGRLRAELDDEL
GRLRKDVDDATMVRVDLERKIETLREELEYGKKLHEEEIADLKEQIKNQGTSVEVDGIAP
DVAELLRQIRAQYEQMVLKNRDEAEQWYKNKFEDLEDKAKLNLGELEKVQGDINDYRKQV
TQLEMELESLRGSNEYLERNLADVEKRYEHEVARYQSRAGALTMELDHASSEMKRHLAEY
KRLMSVKLSLEKEIMTYRRLLEGEEKKMSSSESESDSDEESLVRTKTTKKVIVKTIETKD
GKIVSSSVSEKQFVEGGSDSGSGSSSSSSSDEE

Nucleotide sequence

Length: 1,362

>Phfumi.CG.MTP2014.S3241.g05561.02.t
ATGTCGGGCAAACAAGGACGATCAAGCTACAGAAACACTTTTGGCAACCAGACGGCCTAT
TCCACTGCTGGATCCAAATTATTTAGCAAATCTGGATTCGCTTCGGAGGAGCCGATCACA
TCCAAGCGAGTCTCCTACAGTTACTCCTCTTCCTCATCCGGAGGAGGTGGAATGGGATCA
GGAATGGGAGGTGGTGTTGCGTCATTCGACAGCGATTTCTCCCGCCTCAAACTTAACGAG
AAGGAAGTTCTGAGCGGAATCAACAACCGTTTTGCAAACTACATCGAAAAAGTGAGGTAC
CTCGAGGAACAGAATCAGATTCTGGAGGAAAAGATCCGACAGGCTGGAGCCAAGAAACAG
GTGGAGCTTGGTCCTGACAAGTTGGAAAAATTGCGTCGTCTCCGAGCCCAGGTTGACGAG
GCAACCCTCGCTAAAGTGAGATCGGAAATTACGCGCGACAACTTGAGAGGCGAAGCGTCT
GAACTAAAATGGAAACTTGATCACGAGGGCCGACTTCGCGCCGAACTCGACGACGAGTTG
GGAAGACTGAGGAAGGACGTTGATGACGCAACAATGGTGCGTGTTGATCTGGAACGAAAG
ATCGAAACTTTGAGAGAGGAACTTGAATATGGAAAGAAACTCCACGAAGAGGAAATCGCT
GACTTGAAGGAGCAGATCAAGAACCAGGGAACAAGTGTGGAGGTCGACGGTATCGCTCCG
GATGTAGCCGAACTGCTCAGACAGATCCGGGCCCAATACGAGCAGATGGTTCTCAAGAAC
AGAGACGAAGCTGAACAATGGTACAAGAATAAGTTCGAAGATTTGGAAGACAAGGCGAAA
TTGAACTTGGGTGAACTTGAGAAGGTTCAAGGTGACATCAACGACTACAGGAAGCAAGTA
ACACAACTCGAAATGGAACTGGAATCACTCAGAGGCAGCAACGAGTACCTCGAGCGCAAC
CTAGCGGACGTTGAGAAGCGCTACGAACACGAGGTGGCAAGATACCAATCTCGCGCCGGA
GCTCTTACCATGGAACTTGACCACGCCTCCTCGGAGATGAAGCGCCATCTAGCGGAATAC
AAACGGCTGATGAGCGTGAAACTTTCTCTGGAGAAAGAAATCATGACGTACAGGAGATTG
CTGGAGGGAGAGGAGAAGAAAATGTCTAGCAGCGAAAGTGAGAGCGACTCCGACGAAGAA
TCTTTGGTGAGAACAAAAACAACCAAGAAAGTAATTGTGAAGACAATCGAAACAAAGGAT
GGCAAAATAGTGTCGTCTTCGGTCTCTGAAAAGCAATTCGTCGAAGGCGGATCCGATTCC
GGTTCCGGATCCTCATCGTCGTCATCATCCGACGAAGAGTAA

InterProScan

PANTHER
IF (IPR001664) - T[32-445] 2.2E-97
PRINTS
Keratin_I (IPR002957) - T[176-199] 1.4E-5 - T[302-317] 1.4E-5 - T[328-354] 1.4E-5
ProSitePatterns
Intermediate_filament_CS (IPR018039) - T[374-382] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VIME_HUMAN 38.71 % 281 6.03E-90
GFAP_HUMAN 37.923 % 268 1.74E-85
PERI_HUMAN 36.784 % 250 3.53E-78