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TRANSCRIPT CARD

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  1. Transcript 'Moocul.CG.ELv1_2.S37...' > 
  2. Transcript 'Mooccu.CG.ELv1_2.S53...' > 
  3. Transcript 'KH2012:KH.C2.36.v4.A...' > 
  4. Transcript 'Phfumi.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S3241.g05561.01.t

Possible name(s)

GFAP; PRPH; VIM

Gene model

Phfumi.CG.MTP2014.S3241.g05561

Location

S3241 [874 / 10,508]

Sequences

Amino acid sequence

Length: 458

>Phfumi.CG.MTP2014.S3241.g05561.01.p
HRTSKMSGKQGRSSYRNTFGNQTAYSTAGSKLFSKSGFASEEPITSKRVSYSYSSSSSGG
GGMGSGMGGGVASFDSDFSRLKLNEKEVLSGINNRFANYIEKVRYLEEQNQILEEKIRQA
GAKKQVELGPDKLEKLRRLRAQVDEATLAKVRSEITRDNLRGEASELKWKLDHEGRLRAE
LDDELGRLRKDVDDATMVRVDLERKIETLREELEYGKKLHEEEIADLKEQIKNQGTSVEV
DGIAPDVAELLRQIRAQYEQMVLKNRDEAEQWYKNKFEDLEDKAKLNLGELEKVQGDIND
YRKQVTQLEMELESLRGSNEYLERNLADVEKRYEHEVARYQSRAGALTMELDHASSEMKR
HLAEYKRLMSVKLSLEKEIMTYRRLLEGEEKKMSSSESESDSDEESLVRTKTTKKVIVKT
IETKDGKIVSSSVSEKQFVEGGSDSGSGSSSSSSSDEE

Nucleotide sequence

Length: 1,377

>Phfumi.CG.MTP2014.S3241.g05561.01.t
CACAGAACCAGCAAAATGTCGGGCAAACAAGGACGATCAAGCTACAGAAACACTTTTGGC
AACCAGACGGCCTATTCCACTGCTGGATCCAAATTATTTAGCAAATCTGGATTCGCTTCG
GAGGAGCCGATCACATCCAAGCGAGTCTCCTACAGTTACTCCTCTTCCTCATCCGGAGGA
GGTGGAATGGGATCAGGAATGGGAGGTGGTGTTGCGTCATTCGACAGCGATTTCTCCCGC
CTCAAACTTAACGAGAAGGAAGTTCTGAGCGGAATCAACAACCGTTTTGCAAACTACATC
GAAAAAGTGAGGTACCTCGAGGAACAGAATCAGATTCTGGAGGAAAAGATCCGACAGGCT
GGAGCCAAGAAACAGGTGGAGCTTGGTCCTGACAAGTTGGAAAAATTGCGTCGTCTCCGA
GCCCAGGTTGACGAGGCAACCCTCGCTAAAGTGAGATCGGAAATTACGCGCGACAACTTG
AGAGGCGAAGCGTCTGAACTAAAATGGAAACTTGATCACGAGGGCCGACTTCGCGCCGAA
CTCGACGACGAGTTGGGAAGACTGAGGAAGGACGTTGATGACGCAACAATGGTGCGTGTT
GATCTGGAACGAAAGATCGAAACTTTGAGAGAGGAACTTGAATATGGAAAGAAACTCCAC
GAAGAGGAAATCGCTGACTTGAAGGAGCAGATCAAGAACCAGGGAACAAGTGTGGAGGTC
GACGGTATCGCTCCGGATGTAGCCGAACTGCTCAGACAGATCCGGGCCCAATACGAGCAG
ATGGTTCTCAAGAACAGAGACGAAGCTGAACAATGGTACAAGAATAAGTTCGAAGATTTG
GAAGACAAGGCGAAATTGAACTTGGGTGAACTTGAGAAGGTTCAAGGTGACATCAACGAC
TACAGGAAGCAAGTAACACAACTCGAAATGGAACTGGAATCACTCAGAGGCAGCAACGAG
TACCTCGAGCGCAACCTAGCGGACGTTGAGAAGCGCTACGAACACGAGGTGGCAAGATAC
CAATCTCGCGCCGGAGCTCTTACCATGGAACTTGACCACGCCTCCTCGGAGATGAAGCGC
CATCTAGCGGAATACAAACGGCTGATGAGCGTGAAACTTTCTCTGGAGAAAGAAATCATG
ACGTACAGGAGATTGCTGGAGGGAGAGGAGAAGAAAATGTCTAGCAGCGAAAGTGAGAGC
GACTCCGACGAAGAATCTTTGGTGAGAACAAAAACAACCAAGAAAGTAATTGTGAAGACA
ATCGAAACAAAGGATGGCAAAATAGTGTCGTCTTCGGTCTCTGAAAAGCAATTCGTCGAA
GGCGGATCCGATTCCGGTTCCGGATCCTCATCGTCGTCATCATCCGACGAAGAGTAA

InterProScan

PANTHER
IF (IPR001664) - T[37-450] 3.0E-97
PRINTS
Keratin_I (IPR002957) - T[181-204] 1.5E-5 - T[307-322] 1.5E-5 - T[333-359] 1.5E-5
ProSitePatterns
Intermediate_filament_CS (IPR018039) - T[379-387] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
VIME_HUMAN 38.71 % 281 6.12E-90
GFAP_HUMAN 37.923 % 268 3.27E-85
PERI_HUMAN 36.266 % 251 1.25E-78