- Transcript 'KH2012:KH.C12.566.v1...' >
- Transcript 'KH2012:KH.C5.66.v6.A...' >
- Transcript 'KH2012:KH.C7.633.v2....' >
- Transcript 'KH2012:KH.C5.184.v3....' >
- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S3121.g05450.01.t
Possible name(s)
HOXA4; HOXB4; HOXC4
Gene model
Location
S3121 [483 / 9,737]
Amino acid sequence
Length: 414
>Phfumi.CG.MTP2014.S3121.g05450.01.p
MSVLDQPNVSVDDEFLTKTYNPMVHDINKSSHAPTMNGFSHGVSSGSGKGDVVNMQYFHA
PNGGSTSPDLAMHNIHGLRGVHTPNDANQNGRIPTPLGTNINSPTSQNGMNEEEFGKDSH
GSDSTPPVVYPWMKRIHVSHVINGMDPGKRPRTAYTRHQVLELEKEFHYNRYLTRRRRIE
IAHNLCLSERQVKIWFQNRRMKWKKDHKLPNTKVRNSSSSSSSSLPHLITSMSPTSEANH
VFHDKTPPITPTRHSLIRESPLNTSPHGSQGAMHQLSGGKEQNGIHIARYDPSTVLGGPA
PLFKQEIDPTHLKERLVGEDQQSMVKSTMPQAYAFQDIHSPIYDTVSQAHPFQFEGGAIP
HSTIYGGMMSIPATGTWAAEHDPISQLRPHVLTHLPSSSAPISPYGSYQLSSFQ
Nucleotide sequence
Length: 1,245
>Phfumi.CG.MTP2014.S3121.g05450.01.t
ATGTCGGTCCTCGATCAACCCAATGTCAGCGTGGACGATGAGTTCCTGACAAAGACCTAT
AACCCCATGGTGCACGACATTAACAAAAGCAGTCATGCACCTACGATGAACGGCTTCAGC
CATGGTGTCAGCAGCGGCAGTGGCAAAGGCGACGTAGTGAACATGCAGTACTTTCACGCA
CCGAACGGGGGATCGACAAGCCCCGATCTTGCGATGCACAACATTCATGGCTTGCGTGGC
GTCCATACGCCCAACGATGCCAATCAAAACGGCCGCATTCCAACGCCTCTTGGCACCAAC
ATTAACTCGCCGACCTCACAGAACGGCATGAACGAGGAGGAGTTTGGAAAAGACAGTCAC
GGGTCAGATTCAACGCCCCCTGTTGTCTATCCTTGGATGAAGCGCATCCACGTCAGCCAT
GTGATTAACGGAATGGATCCGGGAAAGAGGCCCCGCACCGCATACACGCGCCATCAAGTG
TTGGAGTTGGAAAAGGAATTCCACTACAACCGGTACTTGACCAGAAGACGACGGATTGAG
ATCGCGCACAATCTGTGCCTCAGTGAACGACAGGTGAAAATCTGGTTTCAAAACCGTCGA
ATGAAATGGAAGAAAGATCACAAACTTCCCAACACCAAAGTGCGAAACAGCTCCTCCTCC
TCGTCGTCTTCACTCCCTCACCTCATCACGAGCATGAGTCCGACATCGGAGGCGAATCAC
GTGTTCCACGATAAAACTCCGCCGATAACACCGACTCGGCATAGCCTAATACGCGAGTCG
CCGCTAAACACCTCGCCGCACGGTAGTCAGGGCGCCATGCATCAGCTGTCTGGCGGTAAA
GAACAAAATGGAATCCACATCGCTCGATACGATCCAAGCACAGTGTTGGGTGGACCAGCG
CCACTATTTAAGCAAGAAATTGACCCAACCCACCTGAAAGAGAGACTTGTAGGCGAAGAC
CAGCAGAGCATGGTGAAAAGCACAATGCCCCAAGCTTACGCATTTCAAGACATCCACAGC
CCGATATACGACACCGTCAGTCAGGCCCATCCTTTTCAATTCGAAGGAGGAGCGATTCCC
CATTCAACCATCTACGGTGGTATGATGTCAATTCCAGCTACAGGAACGTGGGCTGCTGAA
CATGATCCAATCTCCCAGTTGCGGCCACACGTTCTAACTCACCTACCCAGCAGCTCTGCA
CCAATATCCCCTTATGGATCCTACCAGCTTTCATCCTTTCAATGA
| PRINTS |
Homeobox_antennapedia (IPR017995) - T[128-135] 2.9E-5 - T[149-164] 2.9E-5 |
| ProSitePatterns |
Homeobox_Antennapedia_CS (IPR001827) - T[129-134] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[130-206] 1.15E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[146-206] 21.815 |
| SMART |
Homeobox_dom (IPR001356) - T[148-210] 2.3E-27 |
| Pfam |
Homeobox_dom (IPR001356) - T[149-205] 2.0E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[149-207] 3.54405E-27 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[170-181] 2.0E-8 - T[185-195] 2.0E-8 - T[195-204] 2.0E-8 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[181-204] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXA4_HUMAN | 78.431 % | 166 | 7.26E-48 |
| HXC4_HUMAN | 66.406 % | 169 | 5.73E-50 |
| HXB4_HUMAN | 77.32 % | 160 | 1.32E-46 |