- Transcript 'Phfumi.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S3114.g05445.02.t
Possible name(s)
TRIM2; TRIM3; TRIM56
Gene model
Location
S3114 [2,387 / 9,354]
Amino acid sequence
Length: 869
>Phfumi.CG.MTP2014.S3114.g05445.02.p
MSPTRLRTRSVPDYNIFKENIRFAGHMMASSIDLLTKINDEFLTCQICFETYTKPKSLNC
QHTFCLKCLEEYTPPNSTEVICPTCRCEQPLTPQGINGLKDNFFISSMSDMLKTVKEIRS
EDKDGTSLMCDTCDHDSRKVAISRCLDCTDFLCTECSTWHIRTKLTRHHKIVSLTEFESG
IHNQELKSRAKIYCMIHDGEVAKIYCQSCQCPICHECVECGHSRHRRCSLKEEVLNQGHQ
IENLLKTAREKTDVLRTLQTTLKDLKQVKKNDRDSVEVEVEKTCEVFINAIHKRKQELID
ELHNMHATEIKHINADEDSVEMQLSSLVSCMEFSRKVLEYGTPKEVLGLNNQMTQILHQL
LETHPAHAYHKTEETDTISFDTNADASVRVIRDNLGKLNILKTAFAEQVNKVLRQLDSFC
ASDSALALKHNGKVHFHREESTETKLVLQLGKQGIADGEFESTPNLAVNSVNEVITADYD
GAKIQIFDGQGNFKDSFVTEVNKRMCKPAGIAILHNDDIAVCCEDQVHIWTHEGKSVLGF
GKGLFGNCSSIAVDVENRIIVADVGKHCIFIHTDDGKLVAQFGAQGKGESKLVEPRYVAS
DSQCNIIVSDGGDCSVKKFTAQGEFLLSFGAEGPERGQFQGPRGICTDRHDNILVADCWN
HRVDIFTPDGCFMRHIATGADSLHFPWCITLTTNGKLVLSEDYSWSVKVFELPEYRNSSS
MSSMEEIISPTALIPDFDQLAGQFDLPNLLSNKVSWWLTSPNHHDSDHQQMNGIHNTIAT
SNVHPKPNRSLTSKKSSSSDSDLTSVVQSAASPQNHITPVVQQTNEVVTTNGIHGSSTSL
SSSSSGKVSYSGKIPAANDQAIVGIVNGT
Nucleotide sequence
Length: 2,610
>Phfumi.CG.MTP2014.S3114.g05445.02.t
ATGAGTCCAACAAGATTAAGAACGCGCTCGGTACCAGACTACAATATCTTCAAGGAAAAT
ATCAGGTTTGCCGGACATATGATGGCGAGTTCAATCGACTTGCTGACCAAGATCAACGAT
GAGTTTCTTACGTGCCAGATTTGCTTCGAAACTTATACTAAACCAAAAAGCCTCAACTGC
CAGCACACCTTCTGCCTGAAGTGCCTTGAAGAGTACACGCCGCCCAACAGTACGGAAGTG
ATCTGCCCCACCTGTCGATGCGAACAACCGCTCACTCCACAAGGAATCAACGGCCTCAAG
GACAATTTCTTCATCTCGAGTATGTCAGACATGCTAAAAACGGTGAAGGAAATTCGCAGT
GAAGACAAGGACGGCACCTCCCTCATGTGCGACACTTGCGACCACGACAGCCGCAAGGTG
GCAATATCACGTTGTTTGGATTGCACAGATTTCCTTTGCACGGAATGTTCGACTTGGCAC
ATCCGCACCAAGTTGACCAGGCATCATAAAATCGTTTCGCTTACAGAGTTTGAATCAGGA
ATCCACAACCAGGAGTTGAAGAGCAGAGCAAAAATATATTGCATGATACACGATGGGGAG
GTAGCTAAAATCTACTGCCAATCATGTCAATGCCCAATCTGCCACGAATGTGTGGAATGC
GGCCACTCCCGACATAGAAGATGCTCATTGAAAGAAGAAGTGTTAAACCAAGGGCACCAG
ATCGAAAATCTCCTTAAGACAGCGAGGGAGAAGACAGACGTGCTGCGAACACTGCAAACA
ACCTTGAAAGACCTCAAACAAGTGAAGAAAAATGACCGGGACAGTGTCGAAGTAGAGGTC
GAGAAGACCTGCGAAGTTTTTATCAACGCTATTCACAAGCGCAAGCAGGAATTGATCGAT
GAATTGCACAACATGCACGCAACTGAAATCAAGCACATAAACGCCGATGAGGATTCGGTC
GAGATGCAATTGAGCTCGTTGGTTTCCTGCATGGAATTTTCGCGAAAGGTTCTCGAGTAC
GGGACGCCAAAAGAAGTGTTGGGGTTGAACAACCAGATGACACAGATTCTTCACCAATTG
CTGGAGACGCATCCAGCTCACGCGTATCACAAGACAGAAGAAACTGACACAATTAGTTTT
GATACAAATGCCGATGCTAGTGTACGAGTGATAAGAGACAACCTGGGAAAACTGAACATT
CTTAAGACAGCATTCGCTGAACAAGTAAACAAGGTCCTGCGCCAGTTGGACTCATTTTGC
GCCTCAGACTCGGCACTTGCGCTCAAGCACAACGGCAAAGTTCACTTTCATCGGGAGGAA
TCGACCGAAACAAAACTTGTTTTGCAGCTCGGCAAACAAGGAATCGCGGATGGCGAGTTT
GAATCGACACCAAACCTTGCAGTGAACTCGGTGAATGAGGTTATCACCGCTGATTACGAC
GGAGCCAAGATTCAAATATTTGACGGGCAAGGAAACTTCAAAGACTCCTTCGTAACCGAA
GTTAACAAACGAATGTGCAAACCCGCTGGAATTGCTATTCTGCACAACGACGATATCGCT
GTGTGTTGCGAAGATCAAGTTCATATTTGGACGCACGAAGGAAAAAGTGTGCTTGGATTC
GGCAAAGGCTTGTTCGGAAACTGTTCCAGCATTGCTGTGGATGTCGAAAACCGAATAATT
GTGGCTGATGTGGGAAAACATTGCATTTTCATTCACACCGATGACGGGAAGTTGGTGGCG
CAGTTTGGGGCGCAAGGAAAGGGCGAAAGCAAATTAGTGGAACCTAGATACGTAGCCAGC
GACTCGCAATGCAATATCATCGTGTCAGACGGAGGTGACTGCAGCGTCAAAAAGTTCACG
GCACAAGGAGAATTCCTGTTAAGTTTTGGAGCGGAAGGACCAGAACGAGGGCAATTTCAA
GGCCCAAGGGGAATATGCACTGATCGTCATGACAACATACTGGTGGCAGATTGTTGGAAC
CACAGAGTTGACATATTTACACCTGATGGCTGCTTCATGCGTCATATCGCCACAGGAGCA
GACAGTCTTCACTTTCCCTGGTGCATTACGCTCACAACAAACGGAAAACTCGTACTGTCA
GAAGATTACAGTTGGTCTGTGAAAGTTTTTGAACTTCCAGAATACCGCAACTCGTCGTCG
ATGTCGTCTATGGAAGAAATAATATCACCAACAGCCTTAATACCGGACTTTGACCAACTA
GCTGGTCAATTTGATTTACCCAACTTGCTTAGCAATAAAGTATCGTGGTGGCTCACTTCA
CCAAATCACCACGATTCTGATCACCAGCAAATGAACGGCATTCACAACACAATAGCGACA
TCTAACGTCCACCCGAAACCCAACCGCAGCCTCACCAGCAAGAAATCTTCGTCCAGCGAT
AGTGACTTGACCTCGGTGGTGCAATCAGCCGCGTCCCCACAAAACCACATCACACCAGTT
GTGCAACAAACCAACGAAGTTGTCACGACGAACGGAATTCACGGTAGCAGTACAAGTTTA
AGCAGCAGCAGCAGTGGAAAGGTGTCGTATTCTGGGAAAATTCCAGCCGCCAACGATCAG
GCGATTGTCGGGATTGTAAATGGAACGTAA
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[33-108] 5.8E-14 |
| SMART |
Znf_RING (IPR001841) - T[45-85] 3.7E-7 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[45-86] 13.153 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[45-83] 1.1E-7 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[60-69] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[125-174] 8.774 - T[189-230] 10.665 |
| SMART |
Znf_B-box (IPR000315) - T[125-174] 0.012 - T[189-230] 8.9E-4 |
| Pfam |
Znf_B-box (IPR000315) - T[191-230] 9.3E-7 |
| CDD |
Znf_B-box (IPR000315) - T[192-230] 6.62331E-8 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[435-630] 2.8E-40 - T[631-714] 5.9E-19 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[447-490] 7.031 - T[534-575] 8.553 - T[579-622] 9.889 - T[626-669] 15.173 - T[670-713] 5.161 |
| Pfam |
NHL_repeat (IPR001258) - T[639-666] 7.7E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TRIM2_HUMAN | 24.157 % | 189 | 3.18E-50 |
| TRIM3_HUMAN | 33.094 % | 166 | 1.0E-42 |
| TRI56_HUMAN | 29.042 % | 149 | 4.48E-37 |