- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S2.g00048.01.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
S2 [243,930 / 249,737]
Amino acid sequence
Length: 688
>Phfumi.CG.MTP2014.S2.g00048.01.p
MADPFHLVPNGIVSSAFPNVTSTSTSLQSPINSLCNAISESLPSSTSGMFMQSSNEIMTS
SSDATLTSLLGNIWEAMSMQDDTKPKHFCMCNDGIRADSYCHDCKEHLCARCVSAHYRVT
LTKDHVIVKADHRPDLTTDKELHRTLPYLLPPPCASSKNFCNVHANEVNQLFCETCSLAV
CQQCTMYEHNGHNFQYLQQVVDGSKTASLKLLAEARNNYQALEKNIQAIQQMAERIAGRS
KLVKAEIHATVQKHVLALEQREQELIGKVEQIRQDKIQATVLSSSPMSSTVPPNEDDLLL
FSPPDPSLYMAINTFGSVKASVCAQQDHTGTLKHSGGDTFEVIVKHPDTSTYRVNTHDMG
DGRYSFHVQFPFEGQYGVSAQYNGVSVRDSPCIVNVKQGMNYNTRASHTPYLMFGKEGDK
PGDLCRPWGICCNSQGYLIVADRSNNRLQIFNADGSFHHKFGVAGSRPGQFDRPAGVTVD
KQGNIIVADKDNHRIQIFQLDGTFIRAFGERGSKNGQFNYPWDVAVSPNQMIAVTDTRNH
RVQIFAYDGTFLGKYGFEGSMWKHFDSPRGVAFTKDMRLIVTDFNNHRLVIIEPDLQSAR
YLGSEGSQALQFLRPQGVAVDDEGNIVVADSRNHRLQVFTPSGGLLAVFGGNLQVAGSVQ
LDRPSGVTVTKEGRIAVVDFGNNRVVVF
Nucleotide sequence
Length: 2,064
>Phfumi.CG.MTP2014.S2.g00048.01.t
ATGGCAGATCCGTTCCACTTGGTTCCAAATGGAATTGTTTCCAGTGCTTTTCCCAACGTC
ACATCTACTTCTACCTCTTTACAAAGTCCAATTAACTCTCTGTGTAATGCAATAAGTGAA
TCTCTGCCTAGCTCAACAAGTGGAATGTTTATGCAGTCTTCAAATGAAATAATGACCTCA
TCCAGTGACGCCACACTTACCAGTTTGCTTGGTAATATTTGGGAAGCAATGTCAATGCAA
GATGATACCAAGCCCAAACACTTTTGCATGTGTAATGATGGAATACGAGCAGACTCTTAT
TGTCATGATTGCAAAGAGCATTTGTGTGCAAGATGTGTATCAGCACACTATCGTGTAACA
CTGACAAAAGATCATGTTATTGTGAAGGCAGATCATCGTCCTGATCTCACCACAGACAAG
GAACTTCACCGTACGCTACCCTACCTTCTACCTCCACCTTGTGCTAGCAGTAAAAACTTT
TGCAATGTACATGCCAATGAAGTAAATCAACTGTTTTGTGAAACATGCTCATTGGCAGTT
TGCCAGCAATGTACAATGTATGAGCACAATGGCCACAACTTCCAGTATCTGCAGCAAGTC
GTGGATGGCAGTAAAACTGCTTCTCTCAAGTTACTCGCTGAAGCAAGAAACAACTACCAA
GCTCTGGAAAAAAATATACAGGCCATTCAACAAATGGCTGAAAGAATTGCAGGCCGGAGT
AAACTGGTCAAAGCAGAAATCCATGCTACTGTTCAAAAACATGTGTTGGCACTTGAGCAA
AGGGAACAGGAGCTGATCGGAAAAGTAGAACAAATAAGACAAGATAAAATCCAAGCAACA
GTTTTGTCATCGTCGCCCATGAGTTCCACTGTGCCGCCCAATGAGGATGACTTGCTGTTG
TTTTCTCCACCTGATCCAAGCTTGTACATGGCAATCAACACATTTGGAAGTGTGAAAGCA
TCGGTTTGTGCTCAGCAAGACCATACAGGTACTCTAAAACACTCTGGTGGGGATACTTTT
GAAGTGATAGTAAAACACCCTGACACCTCAACGTACAGAGTGAATACCCATGATATGGGT
GACGGCAGATATTCCTTCCATGTCCAGTTCCCTTTTGAAGGACAATATGGAGTTTCTGCC
CAATACAACGGTGTGTCTGTTCGTGACAGTCCTTGTATTGTGAACGTTAAGCAAGGAATG
AACTACAACACTCGGGCCTCACACACTCCATACCTGATGTTTGGTAAAGAAGGTGATAAA
CCGGGTGACCTTTGCCGACCATGGGGGATCTGCTGTAATTCTCAGGGGTATCTGATCGTT
GCTGACCGAAGCAACAATAGACTTCAGATATTTAATGCTGATGGAAGTTTCCATCACAAA
TTCGGTGTGGCTGGCTCACGCCCCGGCCAGTTTGACCGTCCTGCTGGTGTGACCGTGGAC
AAGCAAGGCAATATAATTGTAGCTGACAAAGACAATCACAGAATTCAGATATTTCAGTTA
GATGGAACCTTTATTCGTGCATTTGGTGAAAGGGGTTCAAAAAATGGTCAGTTTAATTAT
CCCTGGGATGTCGCTGTTAGTCCAAATCAAATGATTGCTGTGACTGACACACGAAATCAC
CGGGTGCAGATATTTGCATACGATGGCACATTTCTGGGAAAGTATGGGTTTGAAGGATCA
ATGTGGAAGCACTTTGATTCCCCAAGAGGTGTGGCTTTTACTAAGGATATGCGTCTGATT
GTGACTGACTTCAACAACCACCGTTTGGTGATCATTGAGCCTGACTTACAATCAGCAAGA
TATCTTGGTTCAGAAGGGAGTCAGGCACTCCAGTTTTTACGGCCACAGGGTGTGGCTGTT
GACGATGAAGGCAACATAGTTGTTGCAGATTCAAGAAATCACAGGCTGCAAGTATTTACC
CCGTCCGGTGGCTTGCTGGCTGTATTCGGTGGAAATCTACAAGTTGCCGGCTCGGTTCAA
CTCGATCGACCTTCTGGAGTAACAGTGACCAAAGAGGGTCGCATTGCCGTGGTTGATTTT
GGAAATAATCGTGTTGTTGTCTTT
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[84-130] 9.641 - T[156-197] 10.865 |
| SMART |
Znf_B-box (IPR000315) - T[84-130] 2.3 - T[156-197] 5.8E-6 |
| Pfam |
Znf_B-box (IPR000315) - T[158-194] 2.3E-8 |
| CDD |
Znf_B-box (IPR000315) - T[161-195] 6.95349E-6 |
| SMART |
Filamin/ABP280_rpt (IPR001298) - T[305-399] 0.0094 |
| Gene3D |
Ig-like_fold (IPR013783) - T[317-395] 9.5E-10 |
| SUPERFAMILY |
Ig_E-set (IPR014756) - T[326-403] 2.52E-11 |
| ProSiteProfiles |
Filamin/ABP280_repeat-like (IPR017868) - T[331-396] 12.732 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[396-508] 4.0E-29 - T[509-599] 1.2E-20 - T[600-688] 1.5E-23 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[414-454] 15.358 - T[458-501] 17.455 - T[508-548] 16.674 - T[552-595] 12.829 - T[599-642] 16.921 - T[650-688] 11.904 |
| Pfam |
NHL_repeat (IPR001258) - T[424-451] 5.6E-7 - T[471-498] 1.1E-9 - T[518-545] 1.2E-8 - T[565-591] 7.1E-5 - T[612-639] 1.5E-10 - T[661-688] 1.3E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 44.428 % | 579 | 0 |
| TRIM2_HUMAN | 26.025 % | 191 | 8.17E-52 |
| TRIM3_HUMAN | 26.466 % | 191 | 6.54E-52 |
