Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S291.g01657.01.t

Possible name(s)

RBPJ; RBPJL

Gene model

Phfumi.CG.MTP2014.S291.g01657

Location

S291 [10,509 / 21,729]

Sequences

Amino acid sequence

Length: 492

>Phfumi.CG.MTP2014.S291.g01657.01.p
MRKYLKERNDLTLVVLHAKVAQKSYGNEKRFFCPPPCMYLLGSGWKKKQQVLEDEEGTPE
AGQVHAFIGIGSNEQDMQQLHLDGKNFCTAKTLYISDTDKRKHFMLNVKMFFGTGADVGQ
FHSKRIKVISKPSKKKQSLKNADLCIPSGTKVALFNRLRSQTVSTRYLHVEKGNFHASSI
QWGCFAIHLLDDDESESEEFSVMDGYIHYGQTVKLVCSNTGMALPRLIIRKVDKQTAILD
ADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKETNKEMINDGASWTIISTDK
AEYTFCDGMGPTADPVTPVPTVHNLQLNGGGDVAMLEVKGENFTPLLKVWFGEIESDTMY
RCAEGLLCVVPDISAFREGWKWVKETVQVPINLVRNDGIIYATNLTFTFTPEAGPRQHCP
ASISILHPKRPLPAMPPTPGSEDDAGRHTDHEQGMPMKRTALEVNGMPVASDSAVVSTMN
GSALGNMLRTAS

Nucleotide sequence

Length: 1,479

>Phfumi.CG.MTP2014.S291.g01657.01.t
ATGCGCAAATACCTGAAGGAACGCAACGACCTCACGTTGGTTGTGCTGCACGCCAAGGTG
GCCCAGAAGTCGTACGGCAACGAGAAGAGGTTTTTCTGTCCGCCACCCTGTATGTATCTT
CTGGGTTCCGGCTGGAAGAAGAAACAGCAAGTTCTAGAGGATGAAGAGGGTACTCCAGAA
GCCGGACAAGTTCACGCCTTCATCGGGATTGGCAGCAACGAGCAAGACATGCAGCAACTT
CATTTGGATGGCAAAAACTTCTGCACTGCGAAGACCCTGTACATCTCGGACACGGACAAG
CGCAAACACTTCATGCTCAACGTGAAAATGTTCTTTGGCACCGGCGCCGATGTCGGCCAG
TTCCACAGCAAGCGAATCAAGGTGATCAGCAAGCCGTCCAAGAAGAAGCAGTCGCTCAAG
AACGCCGATCTTTGCATACCGTCCGGAACAAAGGTGGCTCTCTTCAATCGCCTTCGATCT
CAGACCGTCAGCACCCGTTACCTGCATGTGGAGAAGGGAAACTTTCACGCCAGCTCAATA
CAATGGGGATGTTTCGCCATTCACCTTCTTGATGACGATGAATCGGAATCGGAAGAGTTT
TCCGTGATGGACGGTTATATACACTACGGACAGACAGTGAAGCTGGTATGTTCCAATACC
GGGATGGCCCTGCCGCGGCTCATCATAAGAAAGGTTGACAAACAGACGGCGATACTTGAC
GCCGACGATCCCGTCTCTCAACTCCACAAGTGCGCGTTCTACCTGAAGGACACCGAGCGC
ATGTACTTGTGTCTATCCCAGGAGAGAATCATCCAATTCCAGGCGACGCCGTGTCCCAAA
GAAACAAACAAGGAAATGATAAACGACGGTGCATCCTGGACAATTATCAGCACAGATAAA
GCCGAATACACCTTTTGTGATGGCATGGGGCCAACTGCTGACCCGGTTACGCCCGTTCCC
ACTGTCCACAACCTTCAGTTGAATGGTGGTGGTGATGTCGCAATGTTGGAAGTAAAAGGC
GAAAACTTCACCCCGTTGCTCAAAGTTTGGTTTGGTGAGATCGAGTCGGACACCATGTAT
CGGTGTGCAGAGGGCTTGCTGTGTGTGGTGCCTGATATATCCGCCTTCAGAGAGGGCTGG
AAGTGGGTGAAGGAAACAGTACAGGTTCCCATCAATCTGGTCCGCAATGACGGTATCATC
TACGCCACCAACCTCACCTTCACATTCACACCTGAAGCCGGACCACGACAACACTGTCCC
GCCTCAATCAGTATCCTGCACCCAAAGCGGCCCCTTCCCGCCATGCCCCCAACGCCGGGT
TCCGAAGACGACGCCGGACGGCACACGGACCATGAACAGGGAATGCCAATGAAACGGACT
GCTCTAGAAGTGAACGGAATGCCCGTGGCGTCAGATTCGGCCGTGGTGTCGACCATGAAC
GGTTCCGCGTTAGGTAACATGCTTCGGACCGCCTCATGA

InterProScan

SUPERFAMILY	p53-like_TF_DNA-bd (IPR008967) - T[1-143] 2.11E-57
Gene3D	RBP-J/Cbf11/Cbf12_DNA-bd_sf (IPR037095) - T[1-318] 7.5E-163
SMART	RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[12-143] 1.3E-81
Pfam	RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[13-143] 6.3E-48
SUPERFAMILY	BTD_sf (IPR036358) - T[141-298] 2.62E-64
SMART	Beta-trefoil_DNA-bd_dom (IPR015350) - T[144-293] 8.2E-89
Pfam	Beta-trefoil_DNA-bd_dom (IPR015350) - T[144-293] 4.8E-72
SUPERFAMILY	Ig_E-set (IPR014756) - T[299-411] 2.8E-34
CDD	RBP-Jkappa_IPT (IPR038007) - T[315-411] 1.06372E-61
Gene3D	Ig-like_fold (IPR013783) - T[320-413] 2.2E-38

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
SUH_HUMAN	76.667 %	737	0
RBPJL_HUMAN	50.562 %	469	2.38E-162