Aniseed - Transcript Card

Transcript 'Phfumi.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S2749.g05138.01.t

Possible name(s)

PTPN23; RHPN1; RHPN2

Gene model

Phfumi.CG.MTP2014.S2749.g05138

Location

S2749 [998 / 11,020]

Sequences

Amino acid sequence

Length: 517

>Phfumi.CG.MTP2014.S2749.g05138.01.p
DCITGVPAVQRSVSLEKASILFNVGALYTQLGTRADRTRRKGINIAIDAFQSSAGAFDYV
RSNFVNAPTTDLSTSFLQSLTLLMLAQAQECVLERKVLGGFEIQLGKCASISQEAMKVSE
KYSAADKAFGLSEVKAYIPYSWINMVQVKRHHYRALAHYYAGLGLLEQHEAAEPLEISKL
LSNLYLIEKYSEDHPKHDDVAQRKEDRKRLGKSHLRQAVFYHERALQTHSLCKMMRTVDI
LKEYLQHAHNRSVLKFAEVDTEEDFFEIIGAPDIQPYTEYDTDMIAPAFSSVPSSDIFHR
LGPISVFSASNRLGPIRSVKLSTREEKCSFTLQGEGPVIVSNLDDVAMQLGIRNNDVLVS
VDDVDAKWSDHDQIANEIAEKPSIELKLISVIGSFAPARFGEGESMQPNPNSNQNNNNSA
NGSVVRRRQLPTKSRDIKKRHSFGIFTGLRLKAKANGASRFSTISENPAGIEEVGPGGRR
PKHPVSVQRSATSAKYVHGQGTVLRPKKDPYSYRSQC

Nucleotide sequence

Length: 1,554

>Phfumi.CG.MTP2014.S2749.g05138.01.t
GATTGCATTACTGGTGTTCCAGCCGTTCAGCGCTCAGTGTCCTTGGAAAAAGCTAGTATC
CTGTTCAACGTGGGCGCGTTATACACACAACTTGGCACGAGGGCAGACCGCACCCGGCGC
AAAGGCATCAATATTGCAATAGACGCCTTTCAAAGTTCCGCAGGCGCATTCGACTATGTA
CGTTCCAACTTCGTGAATGCCCCCACAACTGACCTGAGCACCTCGTTTCTGCAATCCCTC
ACACTGCTGATGCTGGCACAAGCACAAGAGTGTGTTCTTGAACGGAAGGTGCTTGGCGGA
TTCGAGATCCAACTTGGAAAATGTGCTTCCATCTCACAAGAGGCTATGAAGGTATCGGAA
AAATACAGTGCAGCCGACAAGGCTTTCGGATTGAGTGAAGTGAAAGCTTATATCCCATAC
TCGTGGATAAACATGGTCCAAGTGAAACGTCATCACTACAGAGCTCTTGCACATTACTAT
GCTGGACTGGGACTTCTTGAGCAACACGAGGCTGCCGAGCCCCTGGAGATCTCTAAACTA
CTTTCCAATCTTTACTTGATCGAGAAATATAGCGAGGATCATCCGAAACACGATGATGTA
GCGCAGAGGAAGGAAGATCGAAAAAGACTTGGAAAATCTCACCTCCGTCAAGCCGTGTTC
TACCACGAACGAGCTCTACAGACACATAGCTTGTGCAAGATGATGCGGACTGTCGACATT
CTCAAGGAATACTTGCAACACGCACACAACCGATCTGTGTTGAAATTTGCTGAAGTTGAC
ACGGAGGAAGATTTCTTTGAGATCATTGGAGCACCCGATATACAACCTTACACAGAATAC
GACACAGACATGATTGCACCGGCATTTTCCAGCGTTCCCTCTTCTGATATTTTCCATCGC
TTGGGCCCGATTTCTGTGTTTTCCGCAAGCAACCGGTTGGGTCCAATACGTTCTGTGAAG
CTTTCCACACGAGAAGAAAAATGTTCATTCACATTACAAGGGGAGGGACCAGTCATAGTG
AGCAACCTCGACGATGTCGCAATGCAATTAGGCATACGTAACAATGACGTGTTGGTGTCG
GTTGATGACGTGGACGCTAAATGGAGCGACCACGACCAAATTGCGAATGAGATTGCTGAG
AAACCGAGCATTGAACTGAAGTTGATCTCGGTCATCGGAAGTTTCGCTCCTGCACGGTTC
GGTGAAGGTGAATCGATGCAACCGAATCCGAATAGCAACCAGAACAACAATAATTCCGCG
AACGGATCTGTTGTGCGCCGACGCCAGCTCCCCACCAAGTCACGTGACATCAAGAAACGT
CATTCGTTCGGAATCTTCACAGGTCTTCGCTTGAAGGCGAAGGCCAACGGCGCAAGTCGC
TTCTCGACGATTTCTGAAAATCCTGCGGGAATCGAGGAGGTCGGACCCGGCGGACGAAGG
CCCAAGCACCCGGTGTCTGTGCAGAGGAGCGCCACGTCTGCTAAGTACGTTCACGGACAG
GGCACTGTGCTCAGGCCGAAAAAGGATCCATACAGTTACCGCTCCCAATGCTGA

InterProScan

Gene3D	BRO1_sf (IPR038499) - T[1-251] 2.0E-51
ProSiteProfiles	BRO1_dom (IPR004328) - T[1-304] 31.228
SMART	BRO1_dom (IPR004328) - T[1-316] 5.5E-51
Pfam	BRO1_dom (IPR004328) - T[4-312] 1.3E-56
SUPERFAMILY	PDZ_sf (IPR036034) - T[300-386] 3.1E-6

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RHPN2_HUMAN	40.494 %	292	5.66E-91
RHPN1_HUMAN	35.225 %	260	9.32E-79
RHN2P_HUMAN	36.049 %	234	3.11E-70