Aniseed - Transcript Card

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S25.g00439.02.t

Possible name(s)

TRIM54; TRIM55; TRIM63

Gene model

Phfumi.CG.MTP2014.S25.g00439

Location

S25 [111,907 / 115,503]

Sequences

Amino acid sequence

Length: 252

>Phfumi.CG.MTP2014.S25.g00439.02.p
STETTQSSSIFLEPPTVPVELQCPACRQLYDTPLFFPCSHTFCRFCAAHLIEVADPVLQQ
RNRFLCPTCRNIIKYGPEGVSSLPRNINIEQAVKRFKQESKIRYPACERHQEFHMERLMW
CETCDTNLCPLCALDDKHKDHKIAPIAVLKKFKAVRRRLRGTTDVLSGKIEKIGGNILQT
EGVVTEMEDRGVKLKAKVDKECDAMIGQIEKRRQAMYADIDAIVEKKKGKRQKEIKGLRM
EFNEVSVMTLCR

Nucleotide sequence

Length: 756

>Phfumi.CG.MTP2014.S25.g00439.02.t
TCTACTGAGACCACTCAATCGTCGTCGATATTTTTGGAGCCTCCGACAGTACCGGTTGAG
CTACAGTGTCCAGCATGTCGCCAGTTGTACGACACACCCCTGTTTTTTCCTTGCTCTCAC
ACTTTTTGTCGATTTTGCGCTGCTCATCTGATAGAGGTTGCTGATCCAGTTCTTCAGCAA
CGCAATAGATTTTTATGTCCGACATGTCGAAATATTATCAAATACGGTCCAGAGGGTGTG
AGCAGTTTGCCGAGGAACATCAACATTGAACAGGCGGTAAAGCGTTTTAAACAGGAAAGC
AAGATTCGGTATCCGGCGTGCGAACGGCACCAGGAGTTCCACATGGAGCGACTGATGTGG
TGCGAAACTTGCGACACAAATCTCTGTCCGCTCTGCGCCCTCGATGACAAACATAAAGAC
CACAAGATTGCCCCAATCGCGGTTCTGAAGAAGTTTAAGGCGGTAAGGCGACGCCTACGT
GGTACAACTGACGTTCTTTCCGGAAAGATCGAGAAAATTGGCGGCAATATTTTGCAAACT
GAGGGAGTTGTGACTGAAATGGAAGATCGGGGAGTGAAGTTGAAAGCAAAGGTGGATAAG
GAATGCGACGCGATGATTGGTCAAATCGAGAAGCGACGACAGGCCATGTACGCCGACATC
GACGCTATCGTTGAAAAGAAAAAGGGAAAACGACAGAAGGAGATCAAAGGGTTGAGAATG
GAGTTTAATGAGGTAAGCGTTATGACTTTGTGTAGA

InterProScan

Gene3D	Znf_RING/FYVE/PHD (IPR013083) - T[15-103] 1.2E-14
ProSiteProfiles	Znf_RING (IPR001841) - T[23-70] 11.368
SMART	Znf_RING (IPR001841) - T[23-69] 1.0E-4
Pfam	Znf-RING_LisH (IPR027370) - T[23-67] 2.2E-7
ProSitePatterns	Znf_RING_CS (IPR017907) - T[38-47] .
ProSiteProfiles	Znf_B-box (IPR000315) - T[102-146] 10.737
Pfam	Znf_B-box (IPR000315) - T[104-146] 6.1E-7
CDD	Znf_B-box (IPR000315) - T[105-146] 1.53964E-5

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
TRI54_HUMAN	25.726 %	97.8	9.33E-24
TRI63_HUMAN	25.112 %	88.6	2.21E-20
TRI55_HUMAN	30.493 %	103	2.84E-25