Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Clone 'ma172j12' > 
  2. Transcript 'KH2012:KH.C5.42.v2.A...' > 
  3. Transcript 'Mooccu.CG.ELv1_2.S46...' > 
  4. Clone 'cilv002g03' > 
  5. Transcript 'Phfumi.CG.MTP2014.S2...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S2449.g04859.01.t

Possible name(s)

LAMC1; LAMC3; NTN1

Gene model

Phfumi.CG.MTP2014.S2449.g04859

Location

S2449 [9,565 / 10,720]

Sequences

Amino acid sequence

Length: 385

>Phfumi.CG.MTP2014.S2449.g04859.01.p
MLQELFCAMCQRRTKRKDEGSNPSAFAYVLFVFSLFALVDSTCKGRSDTQCCANKVPVQC
TPNFENIAMNKAVEVSETCGVPKNEKFCRRTEGPVGFTRVCDVCKRSGRKSHPARFLTDI
NDTGRLTYWQSKSVGVSPQRDITLTISFGKQFELAYISMEFFSRLPRALIIYKSMNHGDT
WEPYQYYAEDCHGYFGMRSKEFANGTNEREVLCKTFENQDQVRGGSVVFNPTLGRPSGND
VEESFIMQDWVTATDVRFVLDPQNPRQSLRSGRAVGTLNVANKRRETYTMNHALNPTVTK
GVVITPSTGPTDEFLFKHYAINDISIGGTCKCNGHASSCSVKKGKLSCDCRHNTDGVNCE
KCKAFYHQRPWKRATRSNANECVGE

Nucleotide sequence

Length: 1,155

>Phfumi.CG.MTP2014.S2449.g04859.01.t
ATGTTGCAGGAACTGTTTTGCGCAATGTGCCAACGGCGGACTAAACGAAAAGACGAGGGT
TCGAATCCCAGCGCCTTCGCATACGTTTTATTCGTGTTTTCATTGTTCGCTCTCGTCGAC
TCGACTTGCAAGGGACGGAGCGACACGCAATGTTGTGCGAACAAAGTGCCGGTGCAATGC
ACACCAAACTTCGAGAACATTGCCATGAACAAAGCAGTCGAAGTGTCGGAAACGTGCGGT
GTACCGAAGAACGAAAAATTTTGTCGACGCACTGAGGGCCCAGTCGGGTTCACGCGGGTT
TGCGATGTCTGCAAGAGAAGTGGACGGAAATCTCACCCCGCGAGATTTCTAACTGACATT
AACGACACCGGTAGGCTGACGTACTGGCAATCGAAGTCAGTTGGTGTGAGCCCGCAGCGT
GACATTACTCTCACTATCTCGTTCGGGAAACAATTCGAACTCGCGTACATCTCCATGGAG
TTCTTCTCCCGTCTTCCACGGGCGCTGATCATTTACAAGTCGATGAACCACGGCGACACA
TGGGAACCTTACCAGTACTATGCCGAAGACTGCCACGGCTACTTCGGCATGCGAAGCAAG
GAGTTCGCCAACGGAACGAACGAGCGAGAAGTCTTGTGCAAAACCTTTGAGAACCAGGAC
CAAGTTCGAGGCGGAAGTGTTGTGTTCAACCCGACGCTGGGCCGACCATCGGGAAACGAT
GTAGAAGAGAGTTTTATTATGCAGGACTGGGTAACGGCGACCGATGTTCGTTTTGTGCTC
GATCCGCAAAACCCGCGTCAATCACTGCGCAGCGGCCGTGCTGTAGGGACCCTGAATGTC
GCAAACAAACGTCGTGAGACGTACACAATGAACCACGCCCTCAACCCGACAGTTACCAAA
GGGGTTGTGATCACGCCGTCCACCGGCCCTACAGATGAGTTCCTGTTCAAGCACTACGCT
ATCAACGACATCAGCATAGGAGGGACTTGTAAGTGCAACGGTCACGCATCGAGCTGCTCG
GTAAAGAAGGGTAAATTGTCGTGCGACTGTCGTCACAACACTGACGGGGTGAATTGCGAG
AAATGCAAAGCTTTCTACCACCAACGGCCGTGGAAAAGAGCGACCAGGAGCAATGCAAAT
GAATGTGTCGGTGAG

InterProScan

Gene3D
Laminin_N_sf (IPR038684) - T[37-293] 5.7E-59 - T[297-350] 2.4E-11
SMART
Laminin_N (IPR008211) - T[54-296] 1.5E-48
ProSiteProfiles
Laminin_N (IPR008211) - T[56-329] 39.892
Pfam
Laminin_N (IPR008211) - T[60-328] 2.4E-54
SMART
Laminin_EGF (IPR002049) - T[330-382] 2.7E-6
Pfam
Laminin_EGF (IPR002049) - T[330-377] 1.1E-6
ProSitePatterns
Laminin_EGF (IPR002049) - T[348-382] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LAMC1_HUMAN 35.736 % 206 8.25E-59
LAMC3_HUMAN 33.333 % 193 1.67E-54
NET1_HUMAN 37.126 % 222 8.4E-67