- Clone 'cien87084' >
- Transcript 'Phfumi.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C9.381.v1....' >
- Clone 'AHC0AAA57YJ22' >
- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S2351.g04754.01.t
Possible name(s)
LHX3; LHX4; LHX5
Gene model
Location
S2351 [9,000 / 11,638]
Amino acid sequence
Length: 373
>Phfumi.CG.MTP2014.S2351.g04754.01.p
LSPVIKSIASKELVHQMNYTQDNAITTETENGETTNASHRNVSNSDEMVSLYANGNLYEF
DKFLDESDDEFAFRENEDGDDGIVLDGDDDGESLADLDYPTFLPRKSEEMRKHQEPDTKS
TNFFLRHNRNNKSENADICNTLNSDLDDSGVGCNSSKHETSSTFDASQLTSHLDSRATND
VLFSLLSSETTFKAEIPKCTGCDSHIFDRYILKVQERPWHANCLKCSECGSQLTDKCFSR
GNMVYCKEDFFRRHGTKCASCHQGIPPTEVVRRAQDNVYHLECFQCFMCEQELGTGDQFY
LLEDNRLVCKKDYEQARARDIDVENGLKRPRTTITAKQLETLKIAYNQSPKPARHVREQL
SAETGLDMRVVQV
Nucleotide sequence
Length: 1,119
>Phfumi.CG.MTP2014.S2351.g04754.01.t
CTGTCTCCTGTAATTAAGAGTATTGCATCAAAGGAATTGGTCCATCAAATGAACTACACG
CAAGATAATGCGATTACTACAGAAACTGAGAATGGTGAAACAACGAATGCATCCCACAGA
AACGTTTCGAACTCGGATGAAATGGTTTCATTATATGCAAATGGAAATCTCTACGAATTC
GACAAGTTCTTAGATGAATCAGATGATGAATTTGCGTTTCGAGAGAATGAAGATGGGGAT
GACGGAATTGTTCTGGATGGGGATGATGACGGTGAATCACTAGCAGACCTTGATTACCCT
ACTTTCTTACCCAGAAAAAGCGAGGAAATGCGAAAACATCAAGAACCTGATACAAAAAGC
ACAAATTTTTTTCTTCGCCACAACAGAAACAACAAATCTGAAAATGCCGATATTTGCAAC
ACTTTAAACTCTGACTTAGATGATTCGGGGGTTGGATGTAACTCAAGCAAACATGAGACC
AGCAGTACATTTGATGCATCACAGTTAACTTCCCATTTGGATTCGCGCGCAACTAACGAT
GTTTTGTTTTCTTTGCTTTCATCAGAAACAACTTTTAAAGCCGAGATTCCCAAATGTACC
GGATGCGATTCGCATATATTTGATCGATACATTTTGAAAGTTCAAGAGCGACCATGGCAT
GCAAACTGCCTGAAGTGTTCCGAATGTGGGTCTCAATTAACAGACAAATGCTTTTCGCGT
GGTAACATGGTGTATTGCAAAGAGGACTTTTTCAGGAGACATGGAACAAAGTGTGCATCC
TGTCATCAAGGTATCCCACCGACTGAAGTTGTACGCCGAGCGCAAGACAACGTTTACCAT
TTAGAATGTTTCCAATGTTTTATGTGCGAGCAAGAACTTGGTACTGGTGACCAATTTTAT
CTCCTGGAAGATAATCGCTTAGTTTGCAAAAAAGATTATGAACAGGCCAGAGCACGAGAT
ATAGACGTCGAAAACGGTTTAAAGCGTCCACGAACAACAATAACCGCTAAGCAATTGGAA
ACACTTAAAATTGCTTACAATCAAAGTCCCAAACCTGCCAGACATGTGCGGGAGCAACTC
AGTGCTGAAACTGGTTTGGACATGAGGGTCGTTCAGGTG
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[197-255] 11.623 - T[256-319] 14.226 |
| SMART |
Znf_LIM (IPR001781) - T[198-249] 6.6E-15 - T[257-312] 2.6E-17 |
| Pfam |
Znf_LIM (IPR001781) - T[199-254] 7.1E-13 - T[258-316] 2.6E-18 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[258-293] . |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[325-373] 9.75 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[325-373] 7.27E-9 |
| SMART |
Homeobox_dom (IPR001356) - T[327-373] 0.0055 |
| Pfam |
Homeobox_dom (IPR001356) - T[328-373] 6.3E-10 |
| CDD |
Homeobox_dom (IPR001356) - T[328-373] 1.34855E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LHX4_HUMAN | 69.832 % | 281 | 4.89E-92 |
| LHX3_HUMAN | 70.391 % | 278 | 4.23E-91 |
| LHX5_HUMAN | 43.243 % | 202 | 2.18E-61 |