- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S220.g01445.02.t
Possible name(s)
COL21A1; COL24A1; MARCO
Gene model
Location
S220 [25,445 / 27,452]
Amino acid sequence
Length: 668
>Phfumi.CG.MTP2014.S220.g01445.02.p
MYVLALAVALISSITAQGATAQDGESEALVAPQIRFMRQDSNKPQTVRKLVDTRVRQSTQ
HQVEVEVHSQETASTSEGVECESNCTGSSSCESSSSSACSSTSSCATHCNTGCSCGCNCG
CCGGGGGSSDVTLLLHTLNRLTQGPPGSQGPPGLQGPAGFPGMPGPPGKAGHPGIQGPPG
LQGIPGPPGFGIKGDCGPRGPKGEPGTSEVGKPGPPGPPGPTGKIDYEEFRNSPITVTGV
EGPQGEKGMQGEKGMTGPPGPRGPPGFSSSDIETSKVTREVAGPRGPKGEPGSGIVGPPG
PPGQDGIDGIPGESIKGDQGLPGEHGVGLPGPPGPEGPPGRAVEGEKGESGQDGQPGNPG
RPGLPGPPGPPGVPKRQTDSNGLLNGETGTQGDTGPPGPVGPQGPPGMKGPRGMKGEKGM
NGQSGRHGRPGTPGKSGRGEKGVKGDVGLPGPSIKGEPGPPGPPGRSTHSRTNTGMTSGG
TMCCHQEKVAFMAGLSRNFQGNNRGICFDHVITNQGGAYRSATGCFIVPAGGLYVFHVHI
LRCRSSGPLYVHLMRNGEMISSATNQDSRFETTSATAVMQLRRGDVVWVRLRQGVAYGHS
PSHYTTFSGYSIQLDEAVDVTAAFAQQRYKTGTSYSLYKGATSNVLTDEAAARARSMSGT
MMSMTGND
Nucleotide sequence
Length: 2,007
>Phfumi.CG.MTP2014.S220.g01445.02.t
ATGTATGTTCTGGCACTGGCTGTGGCGTTAATATCGTCCATTACAGCACAAGGTGCTACA
GCACAAGATGGCGAAAGTGAAGCGCTGGTTGCTCCACAGATTCGATTCATGCGTCAAGAT
AGCAACAAACCGCAGACAGTAAGAAAACTGGTGGACACGAGGGTCCGGCAAAGCACACAA
CACCAGGTCGAGGTTGAAGTGCACAGTCAAGAGACGGCGAGTACTTCTGAGGGCGTGGAA
TGCGAGTCGAATTGCACTGGGTCGTCTTCATGCGAGAGCTCAAGCTCAAGCGCCTGTTCT
TCTACCTCATCATGCGCTACACACTGCAACACAGGCTGCAGTTGCGGTTGTAACTGTGGC
TGCTGTGGTGGCGGCGGCGGTTCGTCGGATGTAACTCTGTTGCTGCACACTTTAAACCGC
TTAACACAGGGGCCACCCGGCTCACAAGGACCACCTGGGCTGCAAGGACCCGCAGGTTTT
CCCGGTATGCCTGGGCCCCCCGGAAAAGCAGGACATCCCGGAATCCAGGGACCTCCTGGC
TTGCAAGGTATCCCAGGACCCCCAGGATTTGGTATAAAAGGGGATTGTGGACCACGTGGG
CCCAAAGGAGAGCCCGGGACATCCGAGGTGGGCAAACCTGGACCACCAGGCCCGCCTGGA
CCGACTGGCAAAATTGACTACGAAGAGTTTCGCAATTCTCCGATCACAGTCACAGGCGTA
GAAGGCCCCCAAGGCGAAAAGGGAATGCAAGGTGAAAAAGGCATGACAGGGCCGCCGGGA
CCTAGAGGTCCACCTGGGTTTTCCTCGAGTGATATTGAAACTTCAAAAGTCACGAGAGAA
GTAGCGGGTCCAAGAGGTCCGAAAGGTGAACCAGGCAGTGGAATCGTTGGACCACCAGGA
CCACCCGGTCAGGACGGAATTGATGGCATACCTGGCGAAAGCATCAAAGGTGACCAAGGA
CTGCCCGGAGAACATGGAGTTGGTCTTCCCGGGCCGCCTGGACCAGAAGGCCCACCTGGT
CGTGCAGTTGAGGGAGAGAAAGGTGAAAGTGGTCAGGACGGGCAGCCCGGAAACCCAGGG
CGACCAGGGTTGCCAGGGCCTCCCGGGCCTCCAGGCGTTCCCAAACGCCAAACTGACAGT
AACGGTTTGCTGAACGGAGAAACCGGTACGCAAGGAGATACAGGACCTCCTGGTCCAGTT
GGGCCCCAAGGTCCTCCAGGGATGAAAGGTCCGCGAGGTATGAAAGGAGAAAAGGGAATG
AACGGGCAGTCAGGAAGACACGGACGACCAGGGACTCCAGGAAAAAGCGGCCGTGGGGAG
AAAGGAGTAAAGGGTGACGTGGGTTTGCCAGGACCTTCAATCAAAGGAGAACCCGGACCA
CCAGGCCCACCAGGACGGTCAACACATTCCCGTACAAACACGGGCATGACCAGCGGCGGT
ACAATGTGCTGCCACCAGGAAAAGGTCGCATTCATGGCCGGTCTTTCGAGAAACTTCCAA
GGAAACAACAGGGGGATCTGCTTCGATCACGTGATAACAAACCAAGGCGGCGCCTACCGT
TCAGCAACCGGTTGCTTTATTGTACCAGCGGGAGGACTTTACGTCTTCCATGTGCATATC
TTACGGTGTAGAAGCAGCGGACCGCTCTATGTCCACTTGATGCGCAACGGCGAAATGATC
AGCTCAGCGACCAATCAGGATTCGAGGTTCGAGACAACGTCAGCTACGGCGGTGATGCAG
CTGCGTCGCGGTGACGTAGTTTGGGTAAGATTGCGCCAGGGAGTCGCGTACGGGCACAGT
CCTTCACACTACACTACTTTCTCGGGCTACTCGATTCAGCTGGACGAGGCTGTGGACGTG
ACAGCTGCTTTCGCGCAGCAGCGTTACAAGACTGGCACGAGTTACTCGCTGTACAAGGGC
GCGACATCAAACGTGCTGACCGATGAGGCTGCAGCCCGCGCCAGATCAATGAGTGGCACA
ATGATGTCCATGACCGGCAACGACTGA
| Pfam |
Collagen (IPR008160) - T[143-189] 1.8E-7 - T[386-437] 3.7E-8 |
| SMART |
C1q_dom (IPR001073) - T[482-615] 5.4E-20 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[484-618] 28.298 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[485-619] 4.0E-36 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[487-612] 2.19E-28 |
| Pfam |
C1q_dom (IPR001073) - T[490-610] 8.8E-25 |
| PRINTS |
C1q_dom (IPR001073) - T[499-525] 1.7E-10 - T[526-545] 1.7E-10 - T[571-592] 1.7E-10 - T[603-613] 1.7E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 40.227 % | 126 | 5.14E-30 |
| MARCO_HUMAN | 40.816 % | 112 | 3.67E-26 |
| COOA1_HUMAN | 36.25 % | 110 | 5.33E-25 |
