- Transcript 'Phfumi.CG.MTP2014.S2...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S220.g01445.01.t
Possible name(s)
COL21A1; COL24A1; MARCO
Gene model
Location
S220 [25,430 / 27,452]
Amino acid sequence
Length: 673
>Phfumi.CG.MTP2014.S220.g01445.01.p
MFRNKMYVLALAVALISSITAQGATAQDGESEALVAPQIRFMRQDSNKPQTVRKLVDTRV
RQSTQHQVEVEVHSQETASTSEGVECESNCTGSSSCESSSSSACSSTSSCATHCNTGCSC
GCNCGCCGGGGGSSDVTLLLHTLNRLTQGPPGSQGPPGLQGPAGFPGMPGPPGKAGHPGI
QGPPGLQGIPGPPGFGIKGDCGPRGPKGEPGTSEVGKPGPPGPPGPTGKIDYEEFRNSPI
TVTGVEGPQGEKGMQGEKGMTGPPGPRGPPGFSSSDIETSKVTREVAGPRGPKGEPGSGI
VGPPGPPGQDGIDGIPGESIKGDQGLPGEHGVGLPGPPGPEGPPGRAVEGEKGESGQDGQ
PGNPGRPGLPGPPGPPGVPKRQTDSNGLLNGETGTQGDTGPPGPVGPQGPPGMKGPRGMK
GEKGMNGQSGRHGRPGTPGKSGRGEKGVKGDVGLPGPSIKGEPGPPGPPGRSTHSRTNTG
MTSGGTMCCHQEKVAFMAGLSRNFQGNNRGICFDHVITNQGGAYRSATGCFIVPAGGLYV
FHVHILRCRSSGPLYVHLMRNGEMISSATNQDSRFETTSATAVMQLRRGDVVWVRLRQGV
AYGHSPSHYTTFSGYSIQLDEAVDVTAAFAQQRYKTGTSYSLYKGATSNVLTDEAAARAR
SMSGTMMSMTGND
Nucleotide sequence
Length: 2,022
>Phfumi.CG.MTP2014.S220.g01445.01.t
ATGTTTCGAAATAAGATGTATGTTCTGGCACTGGCTGTGGCGTTAATATCGTCCATTACA
GCACAAGGTGCTACAGCACAAGATGGCGAAAGTGAAGCGCTGGTTGCTCCACAGATTCGA
TTCATGCGTCAAGATAGCAACAAACCGCAGACAGTAAGAAAACTGGTGGACACGAGGGTC
CGGCAAAGCACACAACACCAGGTCGAGGTTGAAGTGCACAGTCAAGAGACGGCGAGTACT
TCTGAGGGCGTGGAATGCGAGTCGAATTGCACTGGGTCGTCTTCATGCGAGAGCTCAAGC
TCAAGCGCCTGTTCTTCTACCTCATCATGCGCTACACACTGCAACACAGGCTGCAGTTGC
GGTTGTAACTGTGGCTGCTGTGGTGGCGGCGGCGGTTCGTCGGATGTAACTCTGTTGCTG
CACACTTTAAACCGCTTAACACAGGGGCCACCCGGCTCACAAGGACCACCTGGGCTGCAA
GGACCCGCAGGTTTTCCCGGTATGCCTGGGCCCCCCGGAAAAGCAGGACATCCCGGAATC
CAGGGACCTCCTGGCTTGCAAGGTATCCCAGGACCCCCAGGATTTGGTATAAAAGGGGAT
TGTGGACCACGTGGGCCCAAAGGAGAGCCCGGGACATCCGAGGTGGGCAAACCTGGACCA
CCAGGCCCGCCTGGACCGACTGGCAAAATTGACTACGAAGAGTTTCGCAATTCTCCGATC
ACAGTCACAGGCGTAGAAGGCCCCCAAGGCGAAAAGGGAATGCAAGGTGAAAAAGGCATG
ACAGGGCCGCCGGGACCTAGAGGTCCACCTGGGTTTTCCTCGAGTGATATTGAAACTTCA
AAAGTCACGAGAGAAGTAGCGGGTCCAAGAGGTCCGAAAGGTGAACCAGGCAGTGGAATC
GTTGGACCACCAGGACCACCCGGTCAGGACGGAATTGATGGCATACCTGGCGAAAGCATC
AAAGGTGACCAAGGACTGCCCGGAGAACATGGAGTTGGTCTTCCCGGGCCGCCTGGACCA
GAAGGCCCACCTGGTCGTGCAGTTGAGGGAGAGAAAGGTGAAAGTGGTCAGGACGGGCAG
CCCGGAAACCCAGGGCGACCAGGGTTGCCAGGGCCTCCCGGGCCTCCAGGCGTTCCCAAA
CGCCAAACTGACAGTAACGGTTTGCTGAACGGAGAAACCGGTACGCAAGGAGATACAGGA
CCTCCTGGTCCAGTTGGGCCCCAAGGTCCTCCAGGGATGAAAGGTCCGCGAGGTATGAAA
GGAGAAAAGGGAATGAACGGGCAGTCAGGAAGACACGGACGACCAGGGACTCCAGGAAAA
AGCGGCCGTGGGGAGAAAGGAGTAAAGGGTGACGTGGGTTTGCCAGGACCTTCAATCAAA
GGAGAACCCGGACCACCAGGCCCACCAGGACGGTCAACACATTCCCGTACAAACACGGGC
ATGACCAGCGGCGGTACAATGTGCTGCCACCAGGAAAAGGTCGCATTCATGGCCGGTCTT
TCGAGAAACTTCCAAGGAAACAACAGGGGGATCTGCTTCGATCACGTGATAACAAACCAA
GGCGGCGCCTACCGTTCAGCAACCGGTTGCTTTATTGTACCAGCGGGAGGACTTTACGTC
TTCCATGTGCATATCTTACGGTGTAGAAGCAGCGGACCGCTCTATGTCCACTTGATGCGC
AACGGCGAAATGATCAGCTCAGCGACCAATCAGGATTCGAGGTTCGAGACAACGTCAGCT
ACGGCGGTGATGCAGCTGCGTCGCGGTGACGTAGTTTGGGTAAGATTGCGCCAGGGAGTC
GCGTACGGGCACAGTCCTTCACACTACACTACTTTCTCGGGCTACTCGATTCAGCTGGAC
GAGGCTGTGGACGTGACAGCTGCTTTCGCGCAGCAGCGTTACAAGACTGGCACGAGTTAC
TCGCTGTACAAGGGCGCGACATCAAACGTGCTGACCGATGAGGCTGCAGCCCGCGCCAGA
TCAATGAGTGGCACAATGATGTCCATGACCGGCAACGACTGA
| Pfam |
Collagen (IPR008160) - T[148-194] 1.8E-7 - T[391-442] 8.7E-8 |
| SMART |
C1q_dom (IPR001073) - T[487-620] 5.4E-20 |
| ProSiteProfiles |
C1q_dom (IPR001073) - T[489-623] 28.298 |
| Gene3D |
Tumour_necrosis_fac-like_dom (IPR008983) - T[490-624] 4.0E-36 |
| SUPERFAMILY |
Tumour_necrosis_fac-like_dom (IPR008983) - T[492-617] 2.19E-28 |
| Pfam |
C1q_dom (IPR001073) - T[495-615] 8.9E-25 |
| PRINTS |
C1q_dom (IPR001073) - T[504-530] 1.7E-10 - T[531-550] 1.7E-10 - T[576-597] 1.7E-10 - T[608-618] 1.7E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COLA1_HUMAN | 40.227 % | 126 | 4.82E-30 |
| MARCO_HUMAN | 40.816 % | 112 | 4.6E-26 |
| COOA1_HUMAN | 36.25 % | 111 | 4.36E-25 |
