- Region 'REG00000211' >
- Transcript 'Cisavi.CG.ENS81.R0.1...' >
- Clone 'cima823495' >
- Transcript 'Haaura.CG.MTP2014.S5...' >
- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S1925.g04294.01.t
Possible name(s)
POLR1C; POLR2C
Gene model
Location
S1925 [1,260 / 2,283]
Amino acid sequence
Length: 340
>Phfumi.CG.MTP2014.S1925.g04294.01.p
MRTRLTLNEQGLSNVHTTDFPGSYSGYNDAWDSRKFISNFRVKVISIDDKEMQFDMIGID
ASIANAFRRILIAEVPTMAIEKVFLYNNTSVIQDEVLAHRLGLIPLDVDARLFEFRQTDD
LEGTAEDTLDLELNIKCTKNPSAPKDATDPNVMYKHHKVFSGDIVWIPKGNQSDVSCVKP
VHDDILIAKLRPGHEIDIKMQAVKGLGRDHAKFSPVATASYRLLPEIKLLSQITGDDAKE
LQGCFAPGVIGIKRNDENKEGAYVVSARMDTCSREVFRHPNLKDKVQLCKVKDHFIYSVE
SAVGLTPDTLVSESIKILMAKCRSFLRELDNAQDKEMDTQ
Nucleotide sequence
Length: 1,023
>Phfumi.CG.MTP2014.S1925.g04294.01.t
ATGCGCACAAGACTGACTTTGAATGAGCAAGGTCTCAGTAATGTCCACACAACCGATTTT
CCTGGAAGTTACAGTGGTTACAATGATGCCTGGGACTCCAGAAAATTTATTTCCAATTTT
CGAGTAAAAGTAATTTCAATTGATGACAAAGAAATGCAGTTTGACATGATTGGAATTGAT
GCATCAATTGCTAATGCATTCCGAAGAATACTGATTGCAGAGGTTCCAACGATGGCTATT
GAAAAAGTATTTTTGTACAACAACACCAGTGTAATTCAAGACGAAGTGTTGGCACACAGA
CTGGGATTAATTCCCCTTGATGTTGATGCTCGTTTGTTTGAATTTCGTCAAACAGATGAC
CTTGAAGGTACGGCAGAGGACACATTGGATCTTGAGTTGAATATAAAATGTACAAAAAAT
CCATCTGCACCTAAAGATGCAACTGATCCCAATGTAATGTACAAACATCACAAAGTGTTT
TCTGGTGACATCGTGTGGATACCAAAAGGCAACCAAAGTGATGTATCATGTGTAAAACCA
GTCCATGATGACATACTTATCGCCAAACTTCGACCAGGCCATGAAATTGATATCAAAATG
CAAGCAGTCAAAGGGCTGGGACGTGATCATGCTAAGTTTTCCCCGGTTGCCACTGCATCT
TACAGACTGCTGCCAGAAATCAAACTTCTGAGTCAAATTACTGGTGATGATGCTAAGGAA
TTACAAGGTTGTTTTGCTCCTGGTGTTATTGGAATAAAACGCAATGATGAGAACAAAGAA
GGGGCCTATGTTGTTTCGGCCAGGATGGATACATGTAGTAGGGAAGTGTTTAGGCATCCC
AATTTGAAGGACAAAGTTCAGTTGTGCAAGGTCAAGGACCATTTTATCTACTCTGTAGAG
TCCGCTGTTGGTTTGACCCCCGACACTCTGGTTTCAGAGTCTATAAAAATTCTGATGGCA
AAATGTCGATCATTTCTTCGTGAACTGGACAATGCGCAAGACAAAGAGATGGATACCCAG
TAA
| PANTHER |
RNAPI/II_AC40 (IPR033901) - T[2-332] 7.0E-136 |
| SUPERFAMILY |
RBP11-like (IPR036603) - T[38-331] 1.77E-31 |
| CDD |
RNAPI/II_AC40 (IPR033901) - T[40-328] 1.67867E-174 |
| SMART |
DNA-dir_RNA_pol_RpoA/D/Rpb3 (IPR011263) - T[51-328] 3.1E-97 |
| Pfam |
DNA-dir_RNA_pol_RpoA/D/Rpb3 (IPR011263) - T[53-322] 7.3E-20 |
| ProSitePatterns |
DNA-dir_RNA_pol_30-40kDasu_CS (IPR001514) - T[65-105] . |
| SUPERFAMILY |
RNApol_insert_sf (IPR036643) - T[76-215] 5.36E-35 |
| Gene3D |
RNApol_insert_sf (IPR036643) - T[77-211] 2.0E-113 |
| Pfam |
DNA-dir_RNA_pol_insert (IPR011262) - T[85-214] 4.3E-28 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPAC1_HUMAN | 60.119 % | 434 | 1.32E-153 |
| RPB3_HUMAN | 27.148 % | 102 | 3.8E-25 |