- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S1881.g04240.01.t
Possible name(s)
ALX4; VSX1; VSX2
Gene model
Location
S1881 [7,028 / 9,721]
Amino acid sequence
Length: 185
>Phfumi.CG.MTP2014.S1881.g04240.01.p
NDASRVYGSEGLEGGTARTSMLITEDRKRKIEKESDDESSSSKKQKKRRNRTIFTSSQLE
ELEKAFQKAHYPDPEAREELAKKANLQEGRIQVWFQNRRAKWRKSENSWGHSSVMAEYGL
YGAMVRHSIPLPQTVINACAKDGFKNESFAPWLIGMHKKTLASQQKLEADEDVPRPPQDA
QELQQ
Nucleotide sequence
Length: 555
>Phfumi.CG.MTP2014.S1881.g04240.01.t
AACGATGCTTCGCGAGTTTATGGAAGCGAAGGGTTGGAAGGCGGAACCGCGCGTACTTCA
ATGTTGATTACAGAAGATCGGAAACGAAAAATCGAAAAAGAATCCGATGATGAAAGTTCC
AGCTCGAAAAAGCAGAAAAAGCGACGAAACAGGACAATATTTACCAGTTCGCAACTTGAG
GAATTGGAAAAGGCATTTCAAAAAGCGCACTACCCTGATCCAGAGGCTAGAGAAGAACTT
GCAAAGAAAGCCAACTTGCAGGAAGGACGGATTCAGGTTTGGTTTCAAAACCGTCGCGCA
AAATGGCGCAAGAGTGAAAACAGTTGGGGTCACAGCAGCGTTATGGCTGAGTATGGACTA
TATGGGGCTATGGTGCGGCATTCAATCCCTCTACCACAGACTGTAATTAACGCATGTGCC
AAAGACGGCTTTAAGAACGAGTCATTCGCCCCGTGGCTTATCGGCATGCACAAAAAAACA
TTGGCGTCCCAGCAAAAACTCGAAGCAGACGAAGACGTTCCGCGTCCACCACAGGACGCC
CAAGAGCTACAACAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[40-107] 1.37E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[45-105] 21.718 |
| SMART |
Homeobox_dom (IPR001356) - T[47-109] 1.3E-26 |
| CDD |
Homeobox_dom (IPR001356) - T[48-106] 1.47783E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[48-104] 3.2E-24 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[80-103] . |
| ProSiteProfiles |
CVC (IPR023339) - T[107-162] 19.737 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ALX4_HUMAN | 73.134 % | 103 | 1.32E-26 |
| VSX1_HUMAN | 60 % | 176 | 1.94E-54 |
| VSX2_HUMAN | 73.636 % | 170 | 5.06E-52 |
